Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00252 ATGGCTGAACAAATTCCTTATGGTGTTGCTACAAGCCTCATTAACAGGTTGGCTTCTGCAGCTTTTCGTGAATTTGGACGGATTTATGGTGTTATGGATCAGTTGGAAAGGTTTAAGAATACAGTTGAATCCATCAGAGCTGTGCTTCTTGATGCCGAGGAGAAACAAGACCAAAGTCATGCTGTGCAAATCTGGATAAAAAGACTCAAAGATCATGTACTTCATCCTGCTGATAACTTGCTTGATGAATTTGTTATTGAAGATATGAGACAGAAAATGGATAAATCTCCTAAGAGCAAAGTGACGCAGAAAACTAACAATGTAAAGAGGGAAACTAGTTCTTTTGTGTTAGAATCAGATATCATTGGAagagaaaatgataaaaacGAGGTTATAAACTTGTTGAGACAACCCCATGGAAACCACAATGTCTCCACGGTTGTTATTGTTGGAATTGGTGGTTTGGGAAAGACGGCTCTTGCTCAATTGGTATATAATGATAGTGAAGTAAAAGAGATTTTTGAAAAGATTATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAAACTATTCTGAAGAACATGTTGAAGTCATTATTACCCAAggaaaaaattgatgatacaTTACCATTGGATAACTTGCAAAATATGCTTCATGACAAACTAACTGGTAAGAGATACTTGTTAGTTCTGGATGACGTTTGGAGTGAGAGTTTTGAAAAATGGGCTCAGTTGAGGACTTACTTGATGTGTGGCGCTCAAGGCAGCAAGGTTTTAGTGACAACTCGTAATAAAACTGTGGCACAGACAATGGGTGTAAGTGACCCCTATGTTTTGAATGGTTTGACTCTAGAAGAATCTTGGGGCTTATTGAAAAACTTCATTACATATGGGGATGAGACCAATGGAGTAAATCAAAATCTGGAATCAATTGGTAAGAAGATAGCTGAAAAGTGCAGCGGTGTTCCACTAGCAATCAGAACACTAGGAGGTTTATTGCAAGGTAAAAGTGAAGAAAGGGAAtggattgacattttacaaggTGACTTTTGGAAATTATGTGAAGACGAAGAAAGCATCATGCCAGTGTTGAAACTCAGTTACCAAAACTTGTCTCCTCAACTAAGACAATGTTTTGCTTACTGCTCTTTATATCCTAAGGATTGGAAAATAAAGAAGGATGAGTTGATTCAATTGTGGATGGCACACGGTTATCTTGAATGTTCAGATGAAAATCAGTCCATGGAAGACATAGGTAACCAATACGTGAAGATTTTTTTGATGAAGTCTTTTTTCCAAAATGTTGATATTAATAGATTTGGTGATATACTTAGTTTCAAAATGCATGATTTAATACATGATATTGCAATGAAAGTATCCGGTAACGATTGTTGCTACTTGAACAGTGAGACAAAAAGACTTGTAGGAAGTCCCATGCATATAATGTTGGAAAGTGATGCTATTGGTTTGTTGGAGTCATTGGATGCAAGCAGGATGCGAACtttaattttaacaaataagTTGAATGAGAAGGAGTTATCTGTCATCTCAAAATTCAAATACTTACGTGTCTTGGAGCTATGGGAATGTTCTTTAAGTAAGATGTGTGATTCAATTGGAAAGATGAAGCATTTAAGATATCTTAACTTGTCGCACTGCAAAGGACTAGGAAGTCTTTCCAAATCCATAAGCAATCTTGTTTGCTTACAAACACTACTATTGAACCAATCTAGAGGTGAATTTTCTACAGAAGATATCTCAAAACATATCAATTTGAGacattttaatattgaaaatttaaaagctTCAGAACCAAAGAGGACAACATCTCGATTTGGAAAATTGGGTGTGGGGCGACAAAATAATagtgtcattttttcaaattggcttTCTCCACTCACAAATATTGTTGAAATCTCTCTCAATTTTGATTCTTATGGTACTTTGAAGTATCTCCCACCAATGGAACGTCTCCCGTTTCTTAAGTCACTCAGTGTATATCATCTTAATGAATTGGAATTCATATATTATGAAGAGCCTCTTTTATCTGAATCATTTTTCCCATCTTTGGAGAAACTCACAATTATCATGTGTCATAAGCTGAAGGGATGGAGGAGGATGAGCGATGATttcaatgatgatgatgataactCTTCACAGTCATACCATCTCTCCTTTCCTCGTCTTTCtgaattatatatatctaattGTGATATCTTGACTCATATACCTGCTTTTCCAAAACTTGACAAGGAATTGACTCTTAGATTCTCTAGTGTGGGGGCATTAGAAGCCACTTTAAACATGGCAGGTTCAAAGGGTTCAATTGAATCCCATCCTCTTTCCATGCTAAAATACTTGGGCATTGGCGGATATGATCTGGTTGTGGAAGACTTCCCAAAGGATTGGTTGCAAAATCTGACTTCTCTCAAAAACAAGTGCAACATGGCCCAAAATTGCTCACATTCCAAACATAATCTTAGAGAGATATTAAAGGTTACTATCTAG 2508 0.3481 MAEQIPYGVATSLINRLASAAFREFGRIYGVMDQLERFKNTVESIRAVLLDAEEKQDQSHAVQIWIKRLKDHVLHPADNLLDEFVIEDMRQKMDKSPKSKVTQKTNNVKRETSSFVLESDIIGRENDKNEVINLLRQPHGNHNVSTVVIVGIGGLGKTALAQLVYNDSEVKEIFEKIMWVCVSDNFDVKTILKNMLKSLLPKEKIDDTLPLDNLQNMLHDKLTGKRYLLVLDDVWSESFEKWAQLRTYLMCGAQGSKVLVTTRNKTVAQTMGVSDPYVLNGLTLEESWGLLKNFITYGDETNGVNQNLESIGKKIAEKCSGVPLAIRTLGGLLQGKSEEREWIDILQGDFWKLCEDEESIMPVLKLSYQNLSPQLRQCFAYCSLYPKDWKIKKDELIQLWMAHGYLECSDENQSMEDIGNQYVKIFLMKSFFQNVDINRFGDILSFKMHDLIHDIAMKVSGNDCCYLNSETKRLVGSPMHIMLESDAIGLLESLDASRMRTLILTNKLNEKELSVISKFKYLRVLELWECSLSKMCDSIGKMKHLRYLNLSHCKGLGSLSKSISNLVCLQTLLLNQSRGEFSTEDISKHINLRHFNIENLKASEPKRTTSRFGKLGVGRQNNSVIFSNWLSPLTNIVEISLNFDSYGTLKYLPPMERLPFLKSLSVYHLNELEFIYYEEPLLSESFFPSLEKLTIIMCHKLKGWRRMSDDFNDDDDNSSQSYHLSFPRLSELYISNCDILTHIPAFPKLDKELTLRFSSVGALEATLNMAGSKGSIESHPLSMLKYLGIGGYDLVVEDFPKDWLQNLTSLKNKCNMAQNCSHSKHNLREILKVTI 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00252 835 SUPERFAMILY L domain-like 432 827 - -
Tsu08g00252 835 PRINTS Disease resistance protein signature 221 235 - -
Tsu08g00252 835 PRINTS Disease resistance protein signature 146 161 - -
Tsu08g00252 835 PRINTS Disease resistance protein signature 540 556 - -
Tsu08g00252 835 PRINTS Disease resistance protein signature 319 333 - -
Tsu08g00252 835 Pfam Rx N-terminal domain 11 99 IPR041118 -
Tsu08g00252 835 PANTHER OS05G0414200 PROTEIN 33 752 - -
Tsu08g00252 835 CDD AAA 122 172 - -
Tsu08g00252 835 CDD RX-CC_like 7 92 IPR038005 -
Tsu08g00252 835 Gene3D - 99 275 IPR027417 -
Tsu08g00252 835 Pfam NB-ARC domain 124 370 IPR002182 GO:0043531
Tsu08g00252 835 Gene3D - 281 367 IPR042197 -
Tsu08g00252 835 Coils Coil 35 55 - -
Tsu08g00252 835 Gene3D Ribonuclease Inhibitor 485 833 IPR032675 -
Tsu08g00252 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 382 IPR027417 -
Tsu08g00252 835 Gene3D - 368 459 IPR036388 -
Tsu08g00252 835 PANTHER DISEASE RESISTANCE PROTEIN RP 33 752 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00252 Tsu-Chr8 2249203 2252505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00252 143 473 WRKY Transcription Factor Family AT5G45050 24.425 6.53e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00252 - - mtr:MTR_8g027540 990.719