Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00243 ATGCTTCCATTTCTCCTCTACTCACTGATTCTTCAATCCATCTATGTTGTAGCTCAAACAAAAAGTACCATAGCTATTGGTGATTCCTTTACTGCAACAACTAGCACCTCTCCATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTTAAGGAAACTAATCTGTTTTTACTTTCTATTTGGTATGCCAAAATTTCTGAGAAAACTATTGTATGGTATGCTAATGGAGACAGTCCTGCACCAAAAGGGTCAAAAGTGGTACTCACTGCCAATGATGGTTTGGTGCTAACTTCTCCAAATGGTGTCAAGTTATGGAATACTCAAGGGCTCAATGCTAAAGTTTCTCGCGGTGTTCTCAATGACACCGGCAACTTTGTTCTTCAGGATGGTAATTTCAATAGTCTGTGGGAGACTTTCAAGTTTCCTAGTGACACCTTGTTGCCTTCTCAGGTTGTTGATAAAGGAAGAAAGCTTTCTTCAAGGCTTAAGGACACAAATTTCAATAAAGGAAGGTTTGAGCTTCTTTTACAAAATGATGGTAACCTTGTTATGCATTCTATTAATTTACCATCTGGTTATGTTAATGAAAACTACTATGAAAGTAACACTGTTGGATCCAGTACATCAAGTGCTGGAGCTCAATTAGTCTTTGACAGATCAGGGTACTTGTATATTTTGGGAGAGAACAATGAGAAATATAATGTGTCAGAAGGAGTGAGTAAAGTTTCTACCACTGATTTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCATACTATACAAGCATCCAAAGAGTTCAACTAAGAGTGAAGGTTGGACCACAGTGTGGTCTAAGCCttataatatatgtatttacactgtcagtgtagGTAGTGGTGTTTGTGGATATAATAGCTTCTGCACTTTGGGAGATGATAAGAGACCAATATGTCAGTGTCCAAAAGGTTACTCACTGATTGATCCTAATGATCCATATGGTAGCTGCAAGGCAGATTTCATACTAGgatgtgaagaagatgaactaagtaaaacaaaagatcttTATGAGTATGAGATTTTGATTGACACTGATTGGCCTCTATCAGATATTGTGCTACAAAGACCTTTTACTGAAGAACAATGTAAGAAATCTTGTATGGAAGATTGTTTGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGAAGAAGAAGTTACCACTTTCAAATGGGAGAGTTGATCCAACTCTTAATGGTGCTAAGGCCTTCTTGAAAATTCCGTGCTTCAAAGCCCTTTTACCGAAGAACAATGTAGGGAAGCTTGCATGGAAGATTGCTTGTGTTCTGTCGCTATTTTCAGGTCAGGTGATAGTTGATGGAAGAACAAGTTACCTCTCTCAAATGGGAGAGTTGATGCAACACTTAATGAAAGATTCTGACACTTCGGATTTTGGTCCAGTCCTCGTAAGATCAGGATACTTGTATGTGAAGGGagagaaaaatgagaaataCAGTGTGTCAGATGAAGAGAGTAAAATCTCTACCGCTGATTTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCACACTTTACAAGCATCCAAAGAGTGCAACTGTGAGTGAAGGTTGGACCATAGTGTGGTCTAAGCCTGATAATATATGCGCTTATATTGCTCCCGGAGGGAGTGGTACATGTGGATATAATAGCTTCTGTGATTTGggaaaagataagagaccaacaTGCCAGTGTCCAAAAAGCTACTCGCTGGTTGATCCTGATGATCCAAATGGTAGCTGCAAGCCAGACTTCATACAAGGATGTAAAGAAGATGAACTAAGTAAAACAAAAGATCTGTATGAGTTTCAGGTTTTGAACGACACTGATTGGCCTCAATCAGATGCTGTGTTTCTAAAGCCTTTTACAGAAGAACAATGTATGCAAGCTTGTATGGAAGATTGTTTGTGTTCTGTGGCTATTTTCAGGTCAGGTGATAGTTGCTGGAAGAAGAAGTTACCTCTCTCAAATGGGAGAGTTGATCCAACACTTAATGGGGCTAAGGCCTTCTTCAAAGTGAGAAAATATAATGCCTCCCTTGTTTTTCCTCCAATTCCAATCATTACGAACAAGAATAAAAATAGACAAACTTTGGTTTTGGTTGGTTCTGTGCTTTTTGGAAGCTCTGCTGTTCTCAATGTTGTATTGATCGTAGCAATCTGTGTCAGTACCTCCATTTTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAAAAGAGACACTTATGTTGAAATTGAATCCAATTTGCGTTGCTTCACTTATGAAGAGCTTGAAGAAGCTACCAATGGCTTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGagtcatcaacaacaacagaaCATGTACCGAAACTCGCGTGGCAGTGAAAAAGTTGAACAGTTTTTTGTTGGATCAAGGTCATAGGGAATTCAGGAATGAACTAAATTCCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGTCTGGAAGCGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGTTGTCGAGAAACAGAAACCAAGTTGGAAACTAAGACTAGAAATTGCAATAGGGGTAGCAAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTGGTATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTCGACGATTACTTCATTGCAAGAATTTCTGACTTTGGATTAGCCAAGATGTTAAACATGAATCAGAGCAAAACCAACACAGGCATAAAAGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAAAACTTGCCTATCAGCGCTAAGGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATAATTACACGTCGAAGAGGTGTTTTAGTAATGGATCAAGAAGACGATGAGAAAGCTATATTAACTGATTGGGCTTATGATTGCTACCAAGAAGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAAGCATTGGAGGATAAGGAAAAGTTGGAGAAATTGGTAATGATTGCCATTTGGTGTGTTCAAGAGGATCCATATCTTAGACCAACCATGAGAAAAGTGTTACACATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACCAATTAGTATTCAATATTCTCTAAACTAA 3249 0.3752 MLPFLLYSLILQSIYVVAQTKSTIAIGDSFTATTSTSPWLLSPSGDFAFGFLPLKETNLFLLSIWYAKISEKTIVWYANGDSPAPKGSKVVLTANDGLVLTSPNGVKLWNTQGLNAKVSRGVLNDTGNFVLQDGNFNSLWETFKFPSDTLLPSQVVDKGRKLSSRLKDTNFNKGRFELLLQNDGNLVMHSINLPSGYVNENYYESNTVGSSTSSAGAQLVFDRSGYLYILGENNEKYNVSEGVSKVSTTDFYLRATLNFDGVFILYKHPKSSTKSEGWTTVWSKPYNICIYTVSVGSGVCGYNSFCTLGDDKRPICQCPKGYSLIDPNDPYGSCKADFILGCEEDELSKTKDLYEYEILIDTDWPLSDIVLQRPFTEEQCKKSCMEDCLCSVAIFRLGDSCWKKKLPLSNGRVDPTLNGAKAFLKIPCFKALLPKNNVGKLAWKIACVLSLFSGQVIVDGRTSYLSQMGELMQHLMKDSDTSDFGPVLVRSGYLYVKGEKNEKYSVSDEESKISTADFYLRATLNFDGVFTLYKHPKSATVSEGWTIVWSKPDNICAYIAPGGSGTCGYNSFCDLGKDKRPTCQCPKSYSLVDPDDPNGSCKPDFIQGCKEDELSKTKDLYEFQVLNDTDWPQSDAVFLKPFTEEQCMQACMEDCLCSVAIFRSGDSCWKKKLPLSNGRVDPTLNGAKAFFKVRKYNASLVFPPIPIITNKNKNRQTLVLVGSVLFGSSAVLNVVLIVAICVSTSIFQYKKKLRRVSKRDTYVEIESNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINNNRTCTETRVAVKKLNSFLLDQGHREFRNELNSIGLTHHKNLVRLLGFCESGSERLLVYEYMSNGTLASFLFNVVEKQKPSWKLRLEIAIGVARGLVYLHEECITGIIHCDIKPQNILLDDYFIARISDFGLAKMLNMNQSKTNTGIKGTKGYVALEWFKNLPISAKVDVYSYGVVLLEIITRRRGVLVMDQEDDEKAILTDWAYDCYQEGAVDALVEGDNEALEDKEKLEKLVMIAIWCVQEDPYLRPTMRKVLHMLEGTVEVQVPPYPSPISIQYSLN 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00243 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 909 921 IPR008271 GO:0004672|GO:0006468
Tsu08g00243 1082 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 207 IPR036426 -
Tsu08g00243 1082 Gene3D Phosphorylase Kinase; domain 1 744 863 - -
Tsu08g00243 1082 SUPERFAMILY Protein kinase-like (PK-like) 769 1075 IPR011009 -
Tsu08g00243 1082 SMART serkin_6 782 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00243 1082 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 10 449 - -
Tsu08g00243 1082 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 489 1076 - -
Tsu08g00243 1082 Pfam Protein tyrosine and serine/threonine kinase 784 1060 IPR001245 GO:0004672|GO:0006468
Tsu08g00243 1082 ProSiteProfiles Bulb-type lectin domain profile. 25 144 IPR001480 -
Tsu08g00243 1082 Gene3D - 16 144 IPR036426 -
Tsu08g00243 1082 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 449 - -
Tsu08g00243 1082 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 489 1076 - -
Tsu08g00243 1082 Pfam D-mannose binding lectin 73 156 IPR001480 -
Tsu08g00243 1082 ProSiteProfiles Protein kinase domain profile. 782 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00243 1082 CDD PAN_AP_plant 615 693 - -
Tsu08g00243 1082 Gene3D - 145 277 IPR036426 -
Tsu08g00243 1082 ProSitePatterns Protein kinases ATP-binding region signature. 788 816 IPR017441 GO:0005524
Tsu08g00243 1082 SMART blect_4 31 146 IPR001480 -
Tsu08g00243 1082 CDD STKc_IRAK 788 1062 - -
Tsu08g00243 1082 CDD B_lectin 40 146 IPR001480 -
Tsu08g00243 1082 Gene3D Transferase(Phosphotransferase) domain 1 864 1068 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00243 Tsu-Chr8 2184024 2190195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00243 768 1072 Receptor kinase-like Gene Family AT1G60800 41.433 2.33e-70 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu08g00243 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00243 - - mtr:MTR_8g011410 949.503