Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00242 ATGGCTTCCTCTCTACTTCTTCCCTTTCTCCTCTACTCATTGATTCTACAATCCATCTGTGTTGTAGTTCAAACCAAAAGTACCATAGCCATTGGTGATTCTTTTACTGCACAAACCAACAATTCTCAATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTTCAAGAAACTGGCCAATTTTTGCTTTCCATTNATACTGTTGGATCCAATACATCAAGTGCTGGAACTCAATTGGTCTTTGACAGATCAGGGTACTTGTATATCTTGGGCGAGAAAAACGAAAAATACAATGTATCAGAAGAAGTGGGTAAAGTCTCTACTACGGATTTTTATCTCAGAGCATTTCTTAATTTTGATGGAGTGTTCACAGTTTACAAGTATCCAAAGAGTTCAACTGAGAGTCAAGTTTGGACTACAGTGTGGTCTAAACCTGATAATATATGTAATTATATTGCAAACGAGGGGAGTGGTGTTTGCGGATATAATAGCTTCTGCAGTTTGGGAGATgataagagaccaaaatgtCAATGTCCAAAAGGTAGTTACTCACTGATTGATCCTGATGATCCATATGGTAGCTGCAAGGCAGATTTCATACAAGGATGTGAAGAGGACGAACTAAGTAAAAACATAAATGATCTCTATGAATTTGACACTTTGATTAACATTGATTGGCCGATGTCAGATTCTGTACTTCAAAAGCCTTTTACTGAAGAACAGTGTCAGAAAGCTTGTATGGAAGATTGTTTGTGTTCTGTGGCTATTTTCAGGGATGGTGATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAATGGGAGATTTGATGTAACACTTGGTTCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACCTCCCTTGTTCCTACAATTCCAATAATTGTGAACAAGAATAATAATAGACAAACGTTGATTTTGGTTGGTTCTGTGCTTTTTAGTAGCTCTGCTATTCTTAATGTTGCATTTATTGTAGCAATATGTGTCTGCACCTCCTTCATTTTTCAGTACAAGAAGAAGCTTAGAAATGCTAGCAAAAGAGACACTTGTGTTGAAATTGAATCCAATTTGCGTTGCTTCACTTATGAAGAGCTTGAAGAAGCTACCAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGagtcatcaacaacaacagcacATGTACCGAAACTCGCGTGGCAGTGAAAAAGCTGAACAGTTTTTTGTTGGATCAAGGTCATAGGGAATTCAGGAATGAACTAAATTCCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGTCTGGAAGCGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTAAATGTTGTCGAGAAACAGAAACCAAGTTGGAAACTAAGACTAGAAATTGCAATAGGGGTAGCAAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTGGGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTCGATGATTACTTCAATGCAAGAATTTCTGACTTTGGATTAGCCAAGATGTTAAACATGAATCAGAGCAAAACCAACACAGGCATAAAGGGAACAAAAGGGTATGTTGCCCTTGAATGGTTTAAAAACTTGCCTATCAATGCTAAGGTGGATGTGTATAGTTATGGTGTAGTGCTACTTGAGATAATTACACTTAGAAGATGTGTTTTAGTAATGgatcaagaagatgaagagaaagCTATATTGACTGATTGGGCTTATGATTGTTACAAAGAAGGTGCTCTAGATGCATTGGTTGAGGGTGACGATGAAGCATTGGAGGACAAGAAAAAGTTGGAGAAATTGGTAATGATTGCTATTTGGTGTGTTCAAGAGGATCCATTTCTTAGACCAACCATGAGAAAAGTGTTACATATGCTTGAAGGTACTGATGAAGTGCAAGTTCCACCATGCCCTTCACCAATTAGTATTCAATATTCTATAAATTGA 2043 0.3661 MASSLLLPFLLYSLILQSICVVVQTKSTIAIGDSFTAQTNNSQWLLSPSGDFAFGFLPLQETGQFLLSIXTVGSNTSSAGTQLVFDRSGYLYILGEKNEKYNVSEEVGKVSTTDFYLRAFLNFDGVFTVYKYPKSSTESQVWTTVWSKPDNICNYIANEGSGVCGYNSFCSLGDDKRPKCQCPKGSYSLIDPDDPYGSCKADFIQGCEEDELSKNINDLYEFDTLINIDWPMSDSVLQKPFTEEQCQKACMEDCLCSVAIFRDGDSCWKKKLPLSNGRFDVTLGSKAFLKVRKDNTSLVPTIPIIVNKNNNRQTLILVGSVLFSSSAILNVAFIVAICVCTSFIFQYKKKLRNASKRDTCVEIESNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINNNSTCTETRVAVKKLNSFLLDQGHREFRNELNSIGLTHHKNLVRLLGFCESGSERLLVYEYMSNGTLASFLLNVVEKQKPSWKLRLEIAIGVARGLVYLHEECITGIIHCDIKPQNILLDDYFNARISDFGLAKMLNMNQSKTNTGIKGTKGYVALEWFKNLPINAKVDVYSYGVVLLEIITLRRCVLVMDQEDEEKAILTDWAYDCYKEGALDALVEGDDEALEDKKKLEKLVMIAIWCVQEDPFLRPTMRKVLHMLEGTDEVQVPPCPSPISIQYSIN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00242 680 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 76 675 - -
Tsu08g00242 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Tsu08g00242 680 ProSiteProfiles Protein kinase domain profile. 380 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00242 680 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 76 675 - -
Tsu08g00242 680 ProSitePatterns Protein kinases ATP-binding region signature. 386 414 IPR017441 GO:0005524
Tsu08g00242 680 SMART serkin_6 380 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00242 680 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 69 - -
Tsu08g00242 680 CDD STKc_IRAK 386 660 - -
Tsu08g00242 680 Gene3D Transferase(Phosphotransferase) domain 1 462 666 - -
Tsu08g00242 680 SUPERFAMILY Protein kinase-like (PK-like) 367 672 IPR011009 -
Tsu08g00242 680 Gene3D Phosphorylase Kinase; domain 1 342 461 - -
Tsu08g00242 680 Pfam Protein tyrosine and serine/threonine kinase 382 658 IPR001245 GO:0004672|GO:0006468
Tsu08g00242 680 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 5 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00242 Tsu-Chr8 2180891 2182933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00242 366 670 Receptor kinase-like Gene Family AT1G60800 41.121 4.97e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu08g00242 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00242 - - mtr:MTR_8g011410 1002.28