LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00240	ATGGCTTCCTCTCTACTTCCGTTTCTCCTCTACTCACTGATTCTTCAATCCACCAGTGTTGTAGCTCAAACTAAAAGTACCATAGCCATTGGCGATTCTTATACTGCACAAAACAACTCCTCTCCATGGTTGCTTTCACCTTCTGGTGAATTTGCCTTTGGTTTTCTTGCACTTAAAGATACTGCtgatctattttttctttctatttggTATGCCAAAATTTCTGACAAAACTGTTGTCTGGTATGCTAATAGAGACAGTCCTGCACCTAAAGGGTCAAAAGTGAAGCTCCAAGCAAATGATGGGTTAGTGCTAACTTATCCAAATGGTGGTGGGTTATGGAATACTACTGAGGTAATCAGTGATGGAGTTTTTCGCGGTGTTTTCAATGACACTGGCAACTTTGTGCTTGAGAATGCTAATTCTAAAAGTGTTTGGGAGACTTTCAAGTTTCCTAGTGACACCTTGTTGCCTTCTCAGGTTGTTGAAAAAGGCGGAAAGCTTTCTTCAAGGCTTAAGGAGACAAATTTCAGTAAAGGAAGGTTTGAGCTTCTTTTACAAGGTAATGGTGATCTTGTTATGCATGCTATTAATTTACCATCTGGCTATGCTAATGGAGATGACTACTATCTTAATTCTGTGCTTCAAAAGCCTTTTACTGAAGAACAATGTAAGAAAGCTTGTATGGAAGATTGTTTGTGTTCTGTGGCTATTTACAGGGAAGGTAATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAATGGGAGATTTGATGTAACACTTGGTTCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACCTCCCTTGTTCCTTCAATTCAAATAACTGTGAGCAAGAATAATAACAGACaaactttgattttggttgGTTCTGTGCTTTTAAGTAGCTCTGCTATTCTTAATGTTGCATTTATTGTAGCAATATGTGTCTGCATCTCCTTCATTTTTCAGTACAAGAAGAAGCTTAGAAGTGCTAGAAAAAGTGGCACTTTTGTTGAAACTGAATCCAATTTGCGTTGCTTCACATACGAAGAGCTTGAAGAAGCTACCAATGGATTTGACAAAGAGTTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATCAACACATCTTCCAAAACTCGAGTGGCAGTGAAAAAGTTGAACAGTTATTTGTTGGATCAAGGTCATAGGGAATTCAGGAATGAACTAAATTCCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGCGAGCGTGGAAGTGAAAGATTGCTTGTTTACGAGTACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGTTTTCGAGAAACAGAAACCAAGTTGGAAAGTAAGACTAGAAATTGCAATAGGGGTAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTGGGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGACGATTACTTCAATGCAAGAATTTCTGACTTTGGATTAGCCAAGATGTTAAACATGAATCAGAGCAATACCATCACTGGCATAAAGGGAACAAGAGGGTATGTTGCCCTTTAA	1596	0.3778	MASSLLPFLLYSLILQSTSVVAQTKSTIAIGDSYTAQNNSSPWLLSPSGEFAFGFLALKDTADLFFLSIWYAKISDKTVVWYANRDSPAPKGSKVKLQANDGLVLTYPNGGGLWNTTEVISDGVFRGVFNDTGNFVLENANSKSVWETFKFPSDTLLPSQVVEKGGKLSSRLKETNFSKGRFELLLQGNGDLVMHAINLPSGYANGDDYYLNSVLQKPFTEEQCKKACMEDCLCSVAIYREGNSCWKKKLPLSNGRFDVTLGSKAFLKVRKDNTSLVPSIQITVSKNNNRQTLILVGSVLLSSSAILNVAFIVAICVCISFIFQYKKKLRSARKSGTFVETESNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINTSSKTRVAVKKLNSYLLDQGHREFRNELNSIGLTHHKNLVRLLGFCERGSERLLVYEYMSNGTLASFLFNVFEKQKPSWKVRLEIAIGVARGLVYLHEECITGIIHCDIKPQNILLDDYFNARISDFGLAKMLNMNQSNTITGIKGTRGYVAL	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00240	531	SUPERFAMILY	alpha-D-mannose-specific plant lectins	65	195	IPR036426	-
	Tsu08g00240	531	ProSiteProfiles	Bulb-type lectin domain profile.	19	150	IPR001480	-
	Tsu08g00240	531	ProSitePatterns	Protein kinases ATP-binding region signature.	364	389	IPR017441	GO:0005524
	Tsu08g00240	531	Gene3D	-	19	150	IPR036426	-
	Tsu08g00240	531	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	482	494	IPR008271	GO:0004672\|GO:0006468
	Tsu08g00240	531	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	214	530	-	-
	Tsu08g00240	531	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	9	211	-	-
	Tsu08g00240	531	Gene3D	Transferase(Phosphotransferase) domain 1	437	531	-	-
	Tsu08g00240	531	SMART	blect_4	33	152	IPR001480	-
	Tsu08g00240	531	Gene3D	Phosphorylase Kinase; domain 1	321	436	-	-
	Tsu08g00240	531	Pfam	D-mannose binding lectin	78	162	IPR001480	-
	Tsu08g00240	531	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	214	530	-	-
	Tsu08g00240	531	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	9	211	-	-
	Tsu08g00240	531	Pfam	Protein kinase domain	361	530	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g00240	531	CDD	B_lectin	44	152	IPR001480	-
	Tsu08g00240	531	SUPERFAMILY	Protein kinase-like (PK-like)	335	530	IPR011009	-
	Tsu08g00240	531	ProSiteProfiles	Protein kinase domain profile.	358	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g00240	531	SMART	serkin_6	358	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00240	Tsu-Chr8	2176306	2178498	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00240	280	530	Receptor kinase-like Gene Family	AT2G23950	43.462	1.04e-54	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Tsu08g00240		Pkinase	5.2e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00240	-		-	mtr:MTR_8g011410	505.368