Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00238 ATGGCTTACTCTCTACTTCTTCCATTTCTTCTCTACTCACTGATTTTTCAATCCATCAGTGTTTTAGCTCAAAACAAAAGTACTATAGCCATTGGTGATTCTTTTACTGCACAAACAAATAACTCTCAATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTTGAAAACACTGATGTTTTTTTGCTTTCCATTTGGTATGCTAAAATTTCTGACAAAACTGTTGTGTGGTATGCTAATAGAGACAATCCTGCACCAAAAGGGTCAAAATTAGAACTCAATGCCAATGATGGTTTGGTGATAACTTCTCCAAATGGTGACAGGTTGTGGAATACTGAAGGACTCAATGCTAAAGTTTCTAGTGGTGTGTTCAATGACACCGGCAACTTTGTGCTTAAGGGTGGAAAACTCAACAGTGTTTGGGAGACTTTCCAGTCTCCTAGTGATACCTTGTTGCCTTCTCAGATTCTTCCAAAAGGTGAAAAGCTTTCTTCAAGGCTTAAGGAGACAAATTTCAGTACAGGGAGGTTTGAGCTGCTTTTACAAAATGATGGTAATCTTGTTATGCATTCTATTAATTTACCATCTGGTTATGCCAATGAAAACTACTATGAAAGTGGAACTGTTGCAATCGATACATCAAGTGCTGGAACTCAGTTGGTCTTTGACAGATCAGGGTACTTGTATGTCTTGAGAGAGAACAATGACAGATTCAATGTGTCAGAAGGAGTGAATAAAGTCTCTACTACTGATTTTTACCTTAGAGCAACTCTTACTTTTGATGGAGTGTTCACACTTTACAAGCATCCAAAGGGTTCAACTGAGAGTGAAGGTTGGACGACAGTGTGGTCTAAACCTGATAATATATGTAATCATGTTGATAACGAAGGGAGTGGTGTTTGTGGATATAACAGCTTCTGCACTTTGGGAGATGATAAGAGACCGATATGTCAGTGTCCACAACGCTACGTACTGGTTGATCCTGATGATCCATATGGTAGCTGCAAGCCAGACTTCATACAAGGATGTGCAGAAGATGAACTAAGTAAAACAAATGATCTCTATGACTTTGAGGTTTTGATTGACACTGATTGGCCTATGGCAGATTCTGTGCTTCAAAGGCCTTTTACGGAAGACGAATGTAAGAAATCTTGCATGGAAGATTGCTTTTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAACGGGAAAGTTGATAAAACTCTTAATGGTGCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACATCTCTTGTTGTTTTTCCTCCAAATCCAATCAATGTGACCaggaataataataacaataataggGAAACTTTGGTTTTGGTTCTTTCTGTGCTTTTTAGTAGCTCTGCTATTCTCAATGTTGTATTCATTGTTGCAATATGTGTCAGCGCCTCCTTCATTTTTCAGTACAAAAAGAAGCTTAGAAGAGTTAGCAAAAGTGACACTTGTGTTGAAATTCAATCCAATTTGCGCTGTTTCACTTATAAAGAACTTGAAGAAGCTACCAATGGATTTTACAAAGAGCTTGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATCAACACAGGTTCCAGAACTCGTGTGGCAGTGAAAAAGTTGAACAACTTTCTGTTGGATCAAGCTCATAGGGAATTCAGGAATGAACTCAATGTCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTTCATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGATGAGATACAGAAACCAAGTTGGAAACTAAGGCTAGAACTTGCAATAGGAATTGCCAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTCGGACCATCCATTGTGACATAAAGCCTCAAAACATACTCCTCGACGATTACTTCAATGCAAGAATTTCTGACTTTGGATTAGCCAAATTGTTGAACGTGAATCAAAGCAAAACCAACACTGGCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAAAACTCGCCTATCACAGCTAAGGTGGATGTGTATAGTTATGGTGTAGTGCTACTTGAAATAATTTCATGTAGAAGATGTGTTGAAGAAATGGagcaagaagatgaagagaaagCTATCTTAACTGATTGGGCTTATGATTGCTACAAAGATGGTGCTGTAGATGCATTGGTTGATGGTGACCATGAGGCACTGGCGGACAAGGAAAAGTTGGAGAAATTGGTAATGATTGCTATTTGGTGTGTTCAAGAGGATCCATATCTTAGACCAACCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCCAGTTCCGCCATACCCCTCACAAATTAGTGTTCAATATTCTATAAATTAA 2466 0.3816 MAYSLLLPFLLYSLIFQSISVLAQNKSTIAIGDSFTAQTNNSQWLLSPSGDFAFGFLPLENTDVFLLSIWYAKISDKTVVWYANRDNPAPKGSKLELNANDGLVITSPNGDRLWNTEGLNAKVSSGVFNDTGNFVLKGGKLNSVWETFQSPSDTLLPSQILPKGEKLSSRLKETNFSTGRFELLLQNDGNLVMHSINLPSGYANENYYESGTVAIDTSSAGTQLVFDRSGYLYVLRENNDRFNVSEGVNKVSTTDFYLRATLTFDGVFTLYKHPKGSTESEGWTTVWSKPDNICNHVDNEGSGVCGYNSFCTLGDDKRPICQCPQRYVLVDPDDPYGSCKPDFIQGCAEDELSKTNDLYDFEVLIDTDWPMADSVLQRPFTEDECKKSCMEDCFCSVAIFRLGDSCWKKKLPLSNGKVDKTLNGAKAFLKVRKDNTSLVVFPPNPINVTRNNNNNNRETLVLVLSVLFSSSAILNVVFIVAICVSASFIFQYKKKLRRVSKSDTCVEIQSNLRCFTYKELEEATNGFYKELGRGAFGIVYEGVINTGSRTRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEFMSNGTLASFLFNDEIQKPSWKLRLELAIGIARGLVYLHEECITRTIHCDIKPQNILLDDYFNARISDFGLAKLLNVNQSKTNTGIRGTKGYVALEWFKNSPITAKVDVYSYGVVLLEIISCRRCVEEMEQEDEEKAILTDWAYDCYKDGAVDALVDGDHEALADKEKLEKLVMIAIWCVQEDPYLRPTMRNVIHMLEGTVEVPVPPYPSQISVQYSIN 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00238 821 SUPERFAMILY Protein kinase-like (PK-like) 503 813 IPR011009 -
Tsu08g00238 821 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 815 - -
Tsu08g00238 821 ProSitePatterns Protein kinases ATP-binding region signature. 531 556 IPR017441 GO:0005524
Tsu08g00238 821 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
Tsu08g00238 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 212 IPR036426 -
Tsu08g00238 821 ProSiteProfiles Bulb-type lectin domain profile. 31 149 IPR001480 -
Tsu08g00238 821 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 8 815 - -
Tsu08g00238 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Tsu08g00238 821 Pfam D-mannose binding lectin 78 161 IPR001480 -
Tsu08g00238 821 SMART serkin_6 525 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00238 821 ProSiteProfiles Protein kinase domain profile. 525 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00238 821 SMART blect_4 36 151 IPR001480 -
Tsu08g00238 821 Gene3D Phosphorylase Kinase; domain 1 487 603 - -
Tsu08g00238 821 Gene3D - 150 281 IPR036426 -
Tsu08g00238 821 Pfam Protein tyrosine and serine/threonine kinase 527 799 IPR001245 GO:0004672|GO:0006468
Tsu08g00238 821 CDD B_lectin 40 151 IPR001480 -
Tsu08g00238 821 Gene3D - 23 149 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00238 Tsu-Chr8 2172197 2174915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00238 511 801 Receptor kinase-like Gene Family AT1G60800 41.356 1.69e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu08g00238 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00238 - - mtr:MTR_8g011410 1319.29