LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00236	ATGGCTTCTTTGCTTCCCTTTCTTCTTTTGTCACTGATTCTTCAATCCATCAGTGTTGTAGCTCAAACCAAAAGTACCATAGCCACTGGTGATTCTTTTACTGCACAAACCAATAACTCTACATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCAATTAAAGATACTGATCTTTTTTTGCTTTCCATTTGGTATGCAAAAATTTCTGAGAAAACTATTGTGTGGTATGCTAATGGAGATAGTCCTGCACCAAAAGGGTCAAAAGTGGAACTCAATGTCAATGATGGGTTGGTGCTAACTTCTCCAAATGGTGACGGGTTATGGAATACTACTGCGTTAATCCGTGGTGGAGTTTTTCGCGGCGTGTTCAATGACACTGGCAACTTTGTGCTTCAGGATGGTGATTTCAGCAGTCAGTGGGAGACTTTCAAGTTTCCTAGTGACACCTTGTTGCCTTCTCAGGTTGTTGAAAAAGGTGGAAAGCTTTCTTCAAGGCTTAAGGAGACAAATTTCAGTAAAGGAAGGTTTGGGCTTCTTTTACAAGGTAATGGTGATCTTGTTATGCATGCTATTAATTTACCATCTGGCTATGCTAGTGGAGACGACTACTATCTTAGTAATACTAATGGAGACACTACATCAAATTCTGTACTTCAAAAGCCTTTTACTGAAGAACAGTGTCAGAAAGCTTGTATGGAAGATTGTTTGTGTTCTGTGGCTATTTACAGGGAAGGTAATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAATGGGAGATTTGATGTAACACTTGGTTCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACCTCCCTTGTTCCTACAATTCCAACAATTGTGAACAAGAATAATAATAGACAAACGTTGGTTTTGGTTGGTTCTGTGCTTTTTAGTAGCTCTGCTATTCTTAATGTTGCATTTATTGTAGTAATATGTGTCTGCACCTCCTTCAATTTTCAGTACAAGAAGAAGCTTAGAAGTGCTAGCAAAAGTGGCatttttgttgaaattgaatCCAATTTGCGTTGCTTCACATATGAAGAGCTTGAAGAAGCTACCAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATCAACACAGCTTCCAAAACTCGTGTGGCAGTGAAAaagttgaacaatttttttatggatcaAGCTCATAGGGAATTCAGGAACGAACTGAATGTCATTGGTCTAACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGTCTGGAAGCGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAGTGTTGTCGAGAAACAGAAACCAAGTTGGAAACTAAGACTAGAAATTGCAATAGGGGTAGCAAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTGGTATCATCCATTGTGACATAAAGCCTCAAAATATTCTCCTCGACGATTACTTCAATGCAAGAATTTCTGACTTTGGATTAGCCAAGTTGTTGAACATGAATCAAAGCAAAACTAACACTGGTATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAAAACTCGCCTATCACAGCTAAGGTGGATGTGTATAGTTATGGTGTAGTGCTACTTGAGATAATTTCATGTAGAAGATGTGTTGAAGAAATGGagcaagaagatgaagagaaagCTATCTTAACTGATTGGGCTTATGATTGTTACAACGAAGGTGCTGTAGATGCATTGGTCGAGGGTGACAATGAAGCATTGGATGACAAGGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCATACCTTAGACCAACCATGAGAAAAGTGTTACATATGCTTGAAGGTACTGTTGATGTGCAAGTTCCACCATACCCCTCACCAATTAGTATTCAATATTCTCTAAATTAA	1989	0.3771	MASLLPFLLLSLILQSISVVAQTKSTIATGDSFTAQTNNSTWLLSPSGDFAFGFLPIKDTDLFLLSIWYAKISEKTIVWYANGDSPAPKGSKVELNVNDGLVLTSPNGDGLWNTTALIRGGVFRGVFNDTGNFVLQDGDFSSQWETFKFPSDTLLPSQVVEKGGKLSSRLKETNFSKGRFGLLLQGNGDLVMHAINLPSGYASGDDYYLSNTNGDTTSNSVLQKPFTEEQCQKACMEDCLCSVAIYREGNSCWKKKLPLSNGRFDVTLGSKAFLKVRKDNTSLVPTIPTIVNKNNNRQTLVLVGSVLFSSSAILNVAFIVVICVCTSFNFQYKKKLRSASKSGIFVEIESNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINTASKTRVAVKKLNNFFMDQAHREFRNELNVIGLTHHKNLVRLLGFCESGSERLLVYEYMSNGTLASFLFSVVEKQKPSWKLRLEIAIGVARGLVYLHEECITGIIHCDIKPQNILLDDYFNARISDFGLAKLLNMNQSKTNTGIRGTKGYVALEWFKNSPITAKVDVYSYGVVLLEIISCRRCVEEMEQEDEEKAILTDWAYDCYNEGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPYLRPTMRKVLHMLEGTVDVQVPPYPSPISIQYSLN	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00236	662	Gene3D	Phosphorylase Kinase; domain 1	326	443	-	-
	Tsu08g00236	662	SMART	blect_4	29	150	IPR001480	-
	Tsu08g00236	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	489	501	IPR008271	GO:0004672\|GO:0006468
	Tsu08g00236	662	ProSiteProfiles	Bulb-type lectin domain profile.	29	148	IPR001480	-
	Tsu08g00236	662	SUPERFAMILY	alpha-D-mannose-specific plant lectins	63	211	IPR036426	-
	Tsu08g00236	662	ProSiteProfiles	Protein kinase domain profile.	365	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g00236	662	SMART	serkin_6	365	640	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g00236	662	SUPERFAMILY	Protein kinase-like (PK-like)	350	655	IPR011009	-
	Tsu08g00236	662	Gene3D	-	17	148	IPR036426	-
	Tsu08g00236	662	Gene3D	Transferase(Phosphotransferase) domain 1	444	648	-	-
	Tsu08g00236	662	Pfam	Protein kinase domain	368	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g00236	662	Pfam	D-mannose binding lectin	76	160	IPR001480	-
	Tsu08g00236	662	ProSitePatterns	Protein kinases ATP-binding region signature.	371	396	IPR017441	GO:0005524
	Tsu08g00236	662	CDD	B_lectin	37	150	IPR001480	-
	Tsu08g00236	662	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	7	214	-	-
	Tsu08g00236	662	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	217	657	-	-
	Tsu08g00236	662	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	7	214	-	-
	Tsu08g00236	662	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	217	657	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00236	Tsu-Chr8	2162225	2164698	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00236	351	652	Receptor kinase-like Gene Family	AT1G60800	40.252	2.57e-72	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Tsu08g00236		Pkinase	1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00236	-		-	mtr:MTR_8g011410	714.146