Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00234 ATGAACAAAACAGGTAGCACTATCTGTCTGGTCTTACTTCATATTTATCTGAGCATTGTGCTGACAACTTCAGCACCTGAAAGTGCCATTCTAACACAACTTCCAGGTTTCAATGGAACAATACCTTCCAAACACTATGCTGGGTATGTAACCGTGGATGAAAGTCATGGAAGGAATTTGTATTACTATTTTGTTGAGTCAGAGGCTAAACCTTCCGAGGATCCAGTGGTTCTTTGGCTTAATGGTGGACCTGGATGCTCTAGCTTTGATGGTTTCATATATGAGCATGGTCCTTTCAATTTTGAAGCAGCAAAGACAAAGGGAAGCCTGCCAACCCTGCACCTTAATCCATACAGCTGGAACAAGGTTTCtagtattatatatttggacTCTCCTGCTGGTGTTGGGTTTTCATACTCTAAGAATGAAACTGATTACGAAACTGGTGACATAAAGACTGCGTCTGACTCACATGCCTTTCTCCTTAAGTGGTTCAAACTATATCCTGAATTCCTTTCCAACCCTTTCTTCATTGCCGGAGAGTCATATGCAGGAGTTTATGTGCCTACTCTTGCCTATGAAGTAATGAAAGGAATTGATGCTGGTGTGACACCGAAACTGAATTTTAAGGGTTACATTGTTGGAAATGGTGTTACAGATGAACAAATTGACGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGTCTTATCTCAGATGAATTGTTTGAGGAGGTTAACCGCGAGTGTAATGGGAATTTCTATAACTCACTCAGTGATAATTGTACAAACAAGCTTTCAAAAATTGATGAGgACATTGATGGGTTGAACGTATATAACATTCTAGAACCATGCTATCATGGCACCGAGGCAGATAAAATTATCACATCCTACATTAGGTTGCCGTCTAGTTTCCGGGAGTTAGGTGAGACTGAGAAACCTCATCCTGTCAGGAAGAGAATGTTCGGTCGCGCTTGGCCTCTAAGAGCACCTGTCAGAGATGGAAATGTACCAACTTGGCCGCAAATTACCAATAGCAACAATGTTCCATGCACAGATGGCTCTATTGCAAATGCATGGTTGAACAATGATGAAGTCAGAAAAGCAATTCACACTGTAGAGAAAAGTGTAGTCAGTAGTTGGGATTTATGCACAGACAAAATTTCCTTCGACCATGACGCCGGAAGCATGATAAAGTACCACAAAAACCTAACTTCCAGAGGATATCGAGCTCTTATATTCAGTGGTGATCATGACATGTGTGTTCCATTTACGGGGAGTCAAGCATGGACGAGATCAATTGGATACAAGGTTGTTGATGAATGGAGGCCTTGGCTATCCAATGGTCAAGTTGTTGGGTATACTCAAGGATATGACAACAATCTTACTTTTCTGACTATAAAGGGAGCTGGCCATACTGTTCCAGAATATAAACCTCAAGAGGCGTTGGATTTTTACAAACGTTTTCTCGCTGGATTGAAgatatga 1488 0.4086 MNKTGSTICLVLLHIYLSIVLTTSAPESAILTQLPGFNGTIPSKHYAGYVTVDESHGRNLYYYFVESEAKPSEDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAAKTKGSLPTLHLNPYSWNKVSSIIYLDSPAGVGFSYSKNETDYETGDIKTASDSHAFLLKWFKLYPEFLSNPFFIAGESYAGVYVPTLAYEVMKGIDAGVTPKLNFKGYIVGNGVTDEQIDGNALVPFVHGMGLISDELFEEVNRECNGNFYNSLSDNCTNKLSKIDEDIDGLNVYNILEPCYHGTEADKIITSYIRLPSSFRELGETEKPHPVRKRMFGRAWPLRAPVRDGNVPTWPQITNSNNVPCTDGSIANAWLNNDEVRKAIHTVEKSVVSSWDLCTDKISFDHDAGSMIKYHKNLTSRGYRALIFSGDHDMCVPFTGSQAWTRSIGYKVVDEWRPWLSNGQVVGYTQGYDNNLTFLTIKGAGHTVPEYKPQEALDFYKRFLAGLKI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00234 495 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 20 17 492 - -
Tsu08g00234 495 Pfam Serine carboxypeptidase 35 491 IPR001563 GO:0004185|GO:0006508
Tsu08g00234 495 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Tsu08g00234 495 Gene3D - 347 494 - -
Tsu08g00234 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 492 IPR001563 GO:0004185|GO:0006508
Tsu08g00234 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Tsu08g00234 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Tsu08g00234 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Tsu08g00234 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Tsu08g00234 495 Gene3D alpha/beta hydrolase 23 319 IPR029058 -
Tsu08g00234 495 SUPERFAMILY alpha/beta-Hydrolases 31 493 IPR029058 -
Tsu08g00234 495 ProSitePatterns Serine carboxypeptidases, histidine active site. 462 479 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00234 Tsu-Chr8 2148295 2152425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00234 356 492 Calmodulin-binding Proteins AT2G22960 46.715 5.49e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00234 K16296 - gmx:100792057 889.797