LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00199	ATGGAGAAATTCGGAATGGAGAATGATTTCGAAGGTGGCGAATGGGTTGGTGGTGAATTCTACTATCGGAAGCGAAGAGAGAAACGACATCAAACCAAAGAGGATGTTCTCTATGGAGTTTTTGCGGATTCTGAagatgacgatgatgatgagTATTCAAGTAGAAAGCGAAGAAAAGATTTTTCGAAGAAACAGGACCTCACTAAACCGGTGAATTTCGTTTCTACTGGAAATTTTATGCCTAATCAAGATAATGTTAATGAGAATTTGAAAGAAGATGATGAGAAGGATAATTATGTTGATGAAGATAGGCCTGGTTTAGGTGTAGGTCTTGGTTTTGGTTCTGCTAGCGCGTCGGGGTCTGGTTTAGGTTTTAATTCTGGTCGTGCTGCAATGAATGGTTCTCATAGGAATGATGAATCTGATGAGAATGATAACGGTGATGATAAGTTTTTGCCTACTGAGTTTGGGAAGAAGATTAAGGAGGGAGCAATGAGGAGGGAGAAGGAGAgattggagaagaagaagaaggggcAGAAGCAGAAGCCTGGTCTAGGTCATGGGGGATCTGTGGATGTTGGGACTTTTGAGACTCATACGAAGGGAATTGGAATGAAGCTTCTAGAGAAGATGGGTTATAAAAAAGGTGCCGGTCTTGGGAAGAATGAGCAGGGTATTTTGAATCCTATTGAGGCACAATTAAGGGCTAAGAATTCTGGTCTTGGATTTAATGAATCGAAGAAGACTACAACGCCGTTGCCCAATTTGCAGACGGAAAAGAGTGCACCTGGAGGAGATTTGCAGCCTACAGTTGGAAGATCGAGAGAACGTTCGTGGTTAAAgcagttgaagaaaaagaaaaaagaagattatGTAACTGCTGAAGAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCAGAGGTTGTTCAGAAGATTTATGATATGCGGGGCCCGCAGGTACGAGTGTATACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAGAGGATGTCCCAATGCCTGAGCTTCAGCATAACGTAGCACTAATAGTTCGGTTGGCTGAGGCTGACATCCAAGAGATTGATCGAGATTTGAGGAAAGAGAGGGATATAGCACTTAgcttgaaaaaagaaaaagagaactTGGAAGCTGAGGCATCGTTTCAAAAGAATCAGCTGGATAATTATGAGAAAATAATGAGTGTGCTGGACCGAGTTGGAGAAGAGAACACCTTAGGAACATTAACATTGGACTCCCTTGCTCAATGCTTTAGAGACATGCACAAAAGATATCCTGATGACTATAAGTTGTGTAACTTGTCATGCATTGCTTGTTCATATGCTCAACCTTTGTTTATCAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCTTCCCATGGTTTTGAGCTGGTATCACAGTGGAAGGAATTGCTTCAAGGTGATGATTGTTTTGATATTTGGGACACATCGTCACCTTATACTCACTTGGTTTTAGAGGTTGTATTACCAGCTGTTAGAATATCTGGTATCAATACATGGAACGCACGGGATCCTGAGCCGATGCTAAGGTTTTTCGAGTCATGGGAAAAACTGCTTCCTTCTTCAGTTCTAGATAAAATGTTGGACGAAGTAGTCTTGCCGAAACTATCAAGTGCAGTAAGTACTTGGGAACCACATCTTGAGACCATTCCTATCCACACATGGGTGCATCCATGGCTACCTTTGCTAGGGCACAAGTTGGAGGGTATCTACGAGATGATTCGTTTCAAATTGGGTACAGTTCTTCATGCGTGGCATCCAAGTGATGGTTCTGCATATGCCATATTGTCCCCTTGGAAGACTGTATTTGATTCTGATAGTTGGCAAAAACTTATGCACCGTTTTATTGTACCAAAGCTAAAGGCTGTATTTGTATCTGATGACTTTCAAGTGAACCCGGCAAGTCAGAAACTTGATCAGTTTTATTGGGTAATGAACTGGGCTTCAGCTATCCCAGTTAATCTGATGGTTGACACGATGGAGATCTTCTTTACCAAGTGGCTGACAGTTTTGTATCGTTGGTTGTGCTCAAATCCTAACTTTGAGGAAGTTACGGAATGGTATTTGGGCTGGAAAGAACTTATTCCAAAAGAACTTTTGGCAAATGAAAAGATTCGATACAAGATCAATTGCGGTCTTGAAATGCTGAACCAGGCTGCTGAAGGTATGGAGGTTGTGCAACCTGGTTTGAAGGAGAAGATAAGCTATATCAGGGTAAGTGAGCAGAGGAAGTTTGAGCGTGAAAGAAATCAACAACAACCTTCTGTCAATGCAGATGGTGCAAATGAAATGAGCGTGAAAGAAATCATTGAAGCCTATGCTCGGGATCATGGTTTACTGTTCAAACTTAAACCTGGTAGAAGGCATAATGGCCATCAAATATATGGGTTTGGCAATTGTGAAGTAACATCTCAGTTCTCAGGGGATTTTTTTTCTGGCTTTCTTAAGTTTAGCTTTCAGACTATGTTGGTGCCACGGAAATTAGTTTGGAAGAGATAA	2547	0.402	MEKFGMENDFEGGEWVGGEFYYRKRREKRHQTKEDVLYGVFADSEDDDDDEYSSRKRRKDFSKKQDLTKPVNFVSTGNFMPNQDNVNENLKEDDEKDNYVDEDRPGLGVGLGFGSASASGSGLGFNSGRAAMNGSHRNDESDENDNGDDKFLPTEFGKKIKEGAMRREKERLEKKKKGQKQKPGLGHGGSVDVGTFETHTKGIGMKLLEKMGYKKGAGLGKNEQGILNPIEAQLRAKNSGLGFNESKKTTTPLPNLQTEKSAPGGDLQPTVGRSRERSWLKQLKKKKKEDYVTAEELLASKQEEDSEVVQKIYDMRGPQVRVYTNLSDLNAEEKAKEEDVPMPELQHNVALIVRLAEADIQEIDRDLRKERDIALSLKKEKENLEAEASFQKNQLDNYEKIMSVLDRVGEENTLGTLTLDSLAQCFRDMHKRYPDDYKLCNLSCIACSYAQPLFIRVFQGWDPLRNPSHGFELVSQWKELLQGDDCFDIWDTSSPYTHLVLEVVLPAVRISGINTWNARDPEPMLRFFESWEKLLPSSVLDKMLDEVVLPKLSSAVSTWEPHLETIPIHTWVHPWLPLLGHKLEGIYEMIRFKLGTVLHAWHPSDGSAYAILSPWKTVFDSDSWQKLMHRFIVPKLKAVFVSDDFQVNPASQKLDQFYWVMNWASAIPVNLMVDTMEIFFTKWLTVLYRWLCSNPNFEEVTEWYLGWKELIPKELLANEKIRYKINCGLEMLNQAAEGMEVVQPGLKEKISYIRVSEQRKFERERNQQQPSVNADGANEMSVKEIIEAYARDHGLLFKLKPGRRHNGHQIYGFGNCEVTSQFSGDFFSGFLKFSFQTMLVPRKLVWKR	848

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00199	848	SMART	G-patch_5	198	244	IPR000467	GO:0003676
	Tsu08g00199	848	Coils	Coil	162	182	-	-
	Tsu08g00199	848	Pfam	G-patch domain	200	242	IPR000467	GO:0003676
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	87	103	-	-
	Tsu08g00199	848	Pfam	GC-rich sequence DNA-binding factor-like protein	419	687	IPR022783	-
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	241	264	-	-
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	42	193	-	-
	Tsu08g00199	848	PIRSF	TFIP11	1	823	IPR024933	-
	Tsu08g00199	848	PANTHER	TUFTELIN-INTERACTING PROTEIN 11	3	818	-	-
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	241	276	-	-
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	50	66	-	-
	Tsu08g00199	848	Coils	Coil	367	401	-	-
	Tsu08g00199	848	Pfam	Tuftelin interacting protein N terminal	1	99	IPR022159	-
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	135	179	-	-
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	68	86	-	-
	Tsu08g00199	848	PANTHER	TUFTELIN-INTERACTING PROTEIN 11-RELATED	3	818	IPR045211	GO:0000390
	Tsu08g00199	848	MobiDBLite	consensus disorder prediction	119	134	-	-
	Tsu08g00199	848	ProSiteProfiles	G-patch domain profile.	200	246	IPR000467	GO:0003676
	Tsu08g00199	848	Coils	Coil	284	304	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00199	Tsu-Chr8	1830241	1835292	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00199	189	260	C2H2 Transcription Factor Family	AT5G26610	41.667	2.37e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00199	K13103		-	gmx:100781621	1176