Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00197 ATGTCTTCTTCTTTCATACCAAAAACAATAAGAGTCACTGTTACTGATAATGATGCCACAGATTCTTCAAGTGAAGATGAAGGTTTCAAGAATGGTTTTTTTCAAATAACAAGAAAATCAGTGAAAGAGATTAGGTTTCAAGAATGTTCTACTCTTTCtaacaagaacaacaaaaagaaacCGGCTGTGTGTACTTCTGGTACCGCTTTATACTCTGAAGAGACAAAAAACAAGAATGGTGTTGTTGGTGAATGTTGTTTGAAACAAGACAATGATAAGGATAAAGATATAAAGAATGTTGTTCATCAAAAGTTTCGCGGTGTTAGGCGTCGGCCGTGGGGGAGATGGGCGGCCGAGATTCGCGATCCTCGGCTTCGAAGGAGAAAATGGTTAGGTACTTTTGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGATTATAGAGGTGCTGATGCTGTTACAAATATTATCAAACCAccacaaaaacatcatcatcaacaacaaaagaaaacattATCAAAGAATGTTTGTGATGACAAAAATGTTGTTAATGTTGTTAATGATTGTGTTGAGTGTGATAACAATAAAGAAGAATGTAATGGTAGTTCATCTTGTTCATCTGGCATTGAAATTTGGAGTGAAAGAATGAATGATCAAGAATGGATTAAAGAAATAAGTGGTGAGAAATATTTGGATTTGGATGATGGTTTTATGTTTGATGATTCATTTGGTTCTTATAATGAACCTATTATTACTACAATGGTTTCTAATGAAAGTGAATGCATTATTGATAATATTCCTTTTCATCTTGAAGAAGATTTTGAATCATGTAAATGGGAAGTTGATAATTACTTCAATGACACTTTGTCAATGCATTGA 891 0.3187 MSSSFIPKTIRVTVTDNDATDSSSEDEGFKNGFFQITRKSVKEIRFQECSTLSNKNNKKKPAVCTSGTALYSEETKNKNGVVGECCLKQDNDKDKDIKNVVHQKFRGVRRRPWGRWAAEIRDPRLRRRKWLGTFDTAEEAALVYDRAAIDYRGADAVTNIIKPPQKHHHQQQKKTLSKNVCDDKNVVNVVNDCVECDNNKEECNGSSSCSSGIEIWSERMNDQEWIKEISGEKYLDLDDGFMFDDSFGSYNEPIITTMVSNESECIIDNIPFHLEEDFESCKWEVDNYFNDTLSMH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00197 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 7 292 - -
Tsu08g00197 296 CDD AP2 103 159 IPR001471 GO:0003700|GO:0006355
Tsu08g00197 296 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 292 - -
Tsu08g00197 296 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Tsu08g00197 296 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Tsu08g00197 296 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Tsu08g00197 296 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Tsu08g00197 296 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Tsu08g00197 296 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700|GO:0006355
Tsu08g00197 296 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00197 Tsu-Chr8 1818759 1819649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00197 8 181 AP2-EREBP Transcription Factor Family AT4G27950 40.230 3.05e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu08g00197 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00197 - - mtr:MTR_8g010340 289.271