Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00188 ATGGGACTCAAGGGTCGGTTTCCTCGTGGCATTATTAATTGTTCAAGCTTAACAGAATTAGATCTTTCGGGTAACAATCTCTCCGGGACCATTCCAGGTGATATATCTACGCTTCTAACATATGTGACAAAGCTTGATCTTTCTTCGAACGCATTTTCTGGAAAGATACCCGATAGCCTTGCAAAATGTACTTATATGAATGTCCTTAAACTTAATCAGAACCGACTCACCGGTCAAATTCCTCTACTGTTAGGCACTCTCGCACGTATTAAGACGTTCGATGTATCTGACAATCTTTTGACCGGACTAATTCCAAACTTCACTGATGGTCACGTTGCTGCAAGTTATGCAAATAATCAAGGTCTTTGTGGAGGTTCATTGGGGATTTGCAAGGCCAATGCTTCCTCGAAGAGTAACACTGCGGTTATAGCTGGAGCTGCTGTTGTTGCAGTGACTCTTGCAGCGTTAGGATTCAGCATTGTAATGTTCTTCTTTGTGCGCCGTGTTTCTTATAGGAAGAAGGAAGAAGATCCTGAAGGAAACAAATGGGCAAAAAGTCTTAAAGGAGCTAAGGCAATTAAGGTATCTCTATTTGAGAAatcaatttcaaaaatgaaattggGCGATCTCTTGAAGGCCACTAACAACTTCAGTAATAGCAATATCATTGGGACAGGAAGAACAGGAACTGTTTACAAAGCTACTCTTAATGACGGCACAACATTTATGGTGAAAAGATTGCAGGAATCTCAACACTCTGAGAAAGAGTTCACGTCTGAGATGGAGATGCTAGGGAATGTCAAACATCCTAATCTGGTTCCTCTTATAGGTTTTTGCATGGCCAAAAAGGAGaagcttttggtctttaaataCATGCCAAATGGAATGCTCCACGATCAACTACATCCTGCTGATGGCATGTGCACCCTCGCCTGGCCTTCGAGACTCAAAATTGCAATAGGAGCGGCCAAAGGATTAGCATGGCTTCATCATACATGCAATCCTCGTATCATCCACCGAAACATAAACTCTAAGTGCATCTTGTTGGATGAAGATTTTGAGCCCAAAATTTCTGATTTCGGTCTTGCCAGATTGATGAATCCACTCGCTACACATTCAAGTACTGTGATAAATGGTGAATTTGGCGATTTTGGTTATGTTGCTCCTGAGTATGCAAAAACACTGGTCGCTACGCCTAAAGGCGATGTTTTCAGCTTCGGGACTGTGCTTCTTGAGTTGGTGACAGGTGAAAGACCTGCAAATGTGGCTAAAGCCCCAGAAAATTTTAAAGGAAATCTCGTAGAATGGATTTCAGAGCTTACAAACAATTCGGAACTCCACAATGCTATTGACGAATCACTAGTTGACAAGGGAGATGATAATGAGCTTTTCGAATTTTTAAAGATTGCATGCAACTGTGTATCACCAACTCCAAGGGAGAGGCCAACCATGTCTGAAGTGTATCAGTTATTAAGAGCTATTGGTGATAAGTACAATTTCACAACCACAGATGAAATATTGGTACCTGAAGATATTGATGATAATAACATGGAGGAACTTATTGTTGCTAGAGAAGGAAATAATTGA 1587 0.4033 MGLKGRFPRGIINCSSLTELDLSGNNLSGTIPGDISTLLTYVTKLDLSSNAFSGKIPDSLAKCTYMNVLKLNQNRLTGQIPLLLGTLARIKTFDVSDNLLTGLIPNFTDGHVAASYANNQGLCGGSLGICKANASSKSNTAVIAGAAVVAVTLAALGFSIVMFFFVRRVSYRKKEEDPEGNKWAKSLKGAKAIKVSLFEKSISKMKLGDLLKATNNFSNSNIIGTGRTGTVYKATLNDGTTFMVKRLQESQHSEKEFTSEMEMLGNVKHPNLVPLIGFCMAKKEKLLVFKYMPNGMLHDQLHPADGMCTLAWPSRLKIAIGAAKGLAWLHHTCNPRIIHRNINSKCILLDEDFEPKISDFGLARLMNPLATHSSTVINGEFGDFGYVAPEYAKTLVATPKGDVFSFGTVLLELVTGERPANVAKAPENFKGNLVEWISELTNNSELHNAIDESLVDKGDDNELFEFLKIACNCVSPTPRERPTMSEVYQLLRAIGDKYNFTTTDEILVPEDIDDNNMEELIVAREGNN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00188 528 Pfam Leucine Rich Repeat 16 37 IPR001611 GO:0005515
Tsu08g00188 528 ProSiteProfiles Leucine-rich repeat profile. 16 38 IPR001611 GO:0005515
Tsu08g00188 528 Pfam Protein tyrosine and serine/threonine kinase 220 490 IPR001245 GO:0004672|GO:0006468
Tsu08g00188 528 Gene3D Phosphorylase Kinase; domain 1 178 291 - -
Tsu08g00188 528 CDD STKc_IRAK 223 491 - -
Tsu08g00188 528 Gene3D Ribonuclease Inhibitor 2 139 IPR032675 -
Tsu08g00188 528 Gene3D Transferase(Phosphotransferase) domain 1 292 513 - -
Tsu08g00188 528 SUPERFAMILY L domain-like 2 108 - -
Tsu08g00188 528 PANTHER LRR RECEPTOR-LIKE KINASE 1 505 - -
Tsu08g00188 528 PANTHER RECEPTOR-LIKE PROTEIN 55 1 505 - -
Tsu08g00188 528 SUPERFAMILY Protein kinase-like (PK-like) 197 491 IPR011009 -
Tsu08g00188 528 ProSiteProfiles Protein kinase domain profile. 217 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00188 Tsu-Chr8 1702913 1704908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00188 1 501 Receptor kinase-like Gene Family AT1G27190 45.365 7.35e-154 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Tsu08g00188 PK_Tyr_Ser-Thr 4.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00188 - - gmx:100801294 768.844