Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00187 ATGGCTCTTGTTCTAAGTAGCTGGATTTTCAGTGTTGATGTTTTTGTTAGTTTCTTGTTGCTGATTAGTTGTGGAATAGTCTATGGGACTGAAACTGATATCTtgtgtttgaaaaatataaagaattCGATCCAAGACCCCAATAATTATTTGACATCTTCCTGGAATTTCAACAATAATACTGAAGGGTATATTTGTAGATTTAATGGTGTTGAATGTTGGCATCCTGATGAgaatagagtcttgaatctcaaATTGTCAAATATGGGACTTAAGGGTCAGTTTCCTCGTGGCATTATTAATTGTTCGAGCTTAACTGGATTAGATCTTTCGGTCAACGATTTTTCTGGAACAATTCCAGAGGATATATCTTCGCTTGTAGCATTTGTGACATCGCTTGATCTATCTTCGAACGCATTTTCTGGGGAGATACCTGTTAGTCTTTCAAATTGTACTTATTTGAATACTCTTAAGCTTAATCAAAACCGACTCACCGGTCAAATTCCTGCACGATTAGGCACTCTCGCACGTATTAAGACGTTCGATGTATCTGACAATCTTTTGACTGGGCCAGTTCCAAACTTCACTGATGGTCACGCTACTGTAAATTATGCAAATAATCAAGGTCTTTGTGGAGGTTCATTGGGGATTTGCAAGGCCACTTCTTCCTCGAAGAGTAACACCGCGGTTATAGCTGGAGCAGCTGTTGGTGCGGTGACTCTTGCAGCATTAGGATTGGGTGTTGTAATGTTCTTCTTTGTTCGCCGTGCTGCTTATAGGAAGAAGGAAGAAGATCCTGAAGGAAACAAATGGGCAAGAAGTCTTAAAGGAACTAAGGGAATTAAGGTATCTCTATTTGAGAAATCAgtttcaaaaatgaaattgagTGATCTCATGAAGGCTACTAACAGCTTCAGTAATAGCAATATCATTGGGACAGGAAGAACAGGAACTGTTTACAAAGCTACTCTTGAGGACGGAACGGCATTTATGGTGAAAAGATTGCAGGAATCTCAACACTCTGAGAAAGAATTTATGTCTGAGATGACGACACTAGGGAGTGTCAAACATCGTAATCTGGTTCCTCTTTTAGGTTTTTGCGTGGCCAAAAAGGAgaggcttttggtctttaaaaacATGCCAAATGGAATGCTCCATGATCACCTACACCCTGCTGATGGTGTGTGCACCCTCGACTGGCCTTCAAGACTCAAAATCGCAATAGGAGCGGCCAAAGGATTTGCGTGGCTTCATCATAGCTGCAATCCCCGTATCATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTAGACGAAGATTTCGAACCCAAAATTTCCGATTTTGGCCTTGCCAGATTGATGAATCCCCTCGATACACATTTAAGTACTTTTGTAAATGGTGAATTTGGTGAATTTGGTTATGTGGCTCCTGAGTATACAAAAACACTGGTCGCTACGCCTAAGGGCGATGTTTTCAGCTTTGGGACTGTGCTTCTTGAGTTGGTGACGGGTGAAAGACCTGCAAATGTGTCTAGAGCGCCAGAAACTTTTAAAGGAAATCTTGCAGAATGGATTGCTGAGCTCACAAGCAACTCGGAACTCCACGATGCCATTGATGAATCACTAGTTAACAAGGGTGATGATAACGAGCTTTTCCAATTTTTAAAGGTTGCATGCAACTGTGTTTCACCAAATCCAAAGGAGAGACCAACCATGTTCGAAGTATATCAGTTTTTAAGAGCTATTGGCGGCAAGTACAATTTCACAACCGAGGATGAAATATTGATACCTGAAGATATCAGTGCTAATAACATGGATGAACTTATTGTTGCTAGCGAaggaaaataa 1848 0.3918 MALVLSSWIFSVDVFVSFLLLISCGIVYGTETDILCLKNIKNSIQDPNNYLTSSWNFNNNTEGYICRFNGVECWHPDENRVLNLKLSNMGLKGQFPRGIINCSSLTGLDLSVNDFSGTIPEDISSLVAFVTSLDLSSNAFSGEIPVSLSNCTYLNTLKLNQNRLTGQIPARLGTLARIKTFDVSDNLLTGPVPNFTDGHATVNYANNQGLCGGSLGICKATSSSKSNTAVIAGAAVGAVTLAALGLGVVMFFFVRRAAYRKKEEDPEGNKWARSLKGTKGIKVSLFEKSVSKMKLSDLMKATNSFSNSNIIGTGRTGTVYKATLEDGTAFMVKRLQESQHSEKEFMSEMTTLGSVKHRNLVPLLGFCVAKKERLLVFKNMPNGMLHDHLHPADGVCTLDWPSRLKIAIGAAKGFAWLHHSCNPRIIHRNISSKCILLDEDFEPKISDFGLARLMNPLDTHLSTFVNGEFGEFGYVAPEYTKTLVATPKGDVFSFGTVLLELVTGERPANVSRAPETFKGNLAEWIAELTSNSELHDAIDESLVNKGDDNELFQFLKVACNCVSPNPKERPTMFEVYQFLRAIGGKYNFTTEDEILIPEDISANNMDELIVASEGK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00187 615 Gene3D Ribonuclease Inhibitor 30 217 IPR032675 -
Tsu08g00187 615 Gene3D Phosphorylase Kinase; domain 1 266 378 - -
Tsu08g00187 615 PANTHER RECEPTOR-LIKE PROTEIN 55 6 593 - -
Tsu08g00187 615 CDD STKc_IRAK 311 579 - -
Tsu08g00187 615 SUPERFAMILY L domain-like 31 199 - -
Tsu08g00187 615 SUPERFAMILY Protein kinase-like (PK-like) 284 579 IPR011009 -
Tsu08g00187 615 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Tsu08g00187 615 ProSiteProfiles Protein kinase domain profile. 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00187 615 Pfam Protein tyrosine and serine/threonine kinase 308 579 IPR001245 GO:0004672|GO:0006468
Tsu08g00187 615 PANTHER LRR RECEPTOR-LIKE KINASE 6 593 - -
Tsu08g00187 615 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00187 Tsu-Chr8 1693738 1696197 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00187 30 589 Receptor kinase-like Gene Family AT1G27190 45.583 4.38e-178 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Tsu08g00187 PK_Tyr_Ser-Thr 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00187 - - gmx:100817267 919.072