Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00171 ATGGACAGAGAATGGGGTTCAAAACCGGGAAGCGGCGGAGCAGCGACGGCACAAAACGAAGCAATAGACCGTCGTGAAAGACTCAGAAGATTAGCATTAGAAACAATAGATCTAGCAAAAGATCCATATTTCATGCGAAATCATCTCGGTAGTTATGAATGCAAACTCTGTTTAACTCTTCATAACAACGAAGGTAACTACCTTGCTCATACACAAGGTAAACGTCATCAAACCAATCTCGCTAAACGTGCTGCTCGTGAAGCTAAAGATGCTCCTACTCAACCTCAACCTCATAAGCGAAAACTTAATCTAAAGAAAACTGTTAAGATTGGGAGACCTGGGTATCGTGTGACTAAGCAATTTGATCCTGATACTAAGCAAAGATCTCTTCTTTTtcagATCGAATATCCTGAGATTGAAGACCTCGCAAAGCCTAGACATCGATTTATGTCCTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCAAGCACAGAGATTGACAAATCCACTCCGAAGTTTTTCTCGCATTGGGACCCAGATTCAAAGATGTTCACACTGCAGTTGTATTTTAAAACCAAACCACCAGAGGCAACCAAACCACAGCCGCCTGCCTCTACACCCAATGGCACCACGGCACCTGGTGTTCCACCAAGACCTATGCCCCCACCACCACAAGCTCCattaccaccaccaccacctcctccaCAAGGGCTACCTCCCGGCGCACCAATGGGAAATCCTCCTCGAGCACCTCCGCCTCCAATGTCAGGATCAATGCCGCCGCCACCTCCTATGGCTGCAAATGGTCCTAGACCTATACCTTCTGGTTCAATGCCACCTCTCCCACCCCCAGCACCGCTTGGTGCCAGACCTCCATCAATGCCACCTCCTCCACAAGGTTTTCCAGGCCAACAAATGCAGAGCTAG 987 0.4559 MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTQPQPHKRKLNLKKTVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEATKPQPPASTPNGTTAPGVPPRPMPPPPQAPLPPPPPPPQGLPPGAPMGNPPRAPPPPMSGSMPPPPPMAANGPRPIPSGSMPPLPPPAPLGARPPSMPPPPQGFPGQQMQS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00171 328 Gene3D - 93 218 - -
Tsu08g00171 328 Pfam Zinc-finger of C2H2 type 52 76 - -
Tsu08g00171 328 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Tsu08g00171 328 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Tsu08g00171 328 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g00171 328 Gene3D Classic Zinc Finger 46 89 - -
Tsu08g00171 328 SMART CactinC_cactus_3 89 217 - -
Tsu08g00171 328 MobiDBLite consensus disorder prediction 216 322 - -
Tsu08g00171 328 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Tsu08g00171 328 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Tsu08g00171 328 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 317 - -
Tsu08g00171 328 MobiDBLite consensus disorder prediction 213 328 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00171 1 294 C2H2 Transcription Factor Family AT2G32600 73.129 1.69e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00171 K12826 - egr:104425946 442.58