Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00148 ATGGCTTTGGAGAACTTCTACAACATATTATTATCTAGTGCAACAAAGCTAGCAAATCATTCTTGGACTACATGGCAGCCATTAGTCTCACCATGCTTCTTAGAACACATAACTTTACCTCTAGAATTTGGCTTCCTTGTGATATTATTAGTCCAACTCCTAAGAAATTGCATGAACAATATCACCAAGCAAAACAAGGCTTCAAATATACATCCAAATGGCATGAAATATGGTTTTGCTTACAAAATCAGCTTAGTTTGCAccactttattgttttctgttcATGCCTTAATTCTAATATTGATGCTCAATCATGAGCCTCAATGTAGATCAAAACTTCAAGCTTATACATCAGAGATAATTCAAGTGTTATCATGTGCAATTATTCTAATAGCAATAtgcaaaatgtcaaaaaaaacaaatgctCATTTCCCTTGGATTCTAAGAGCTTGGTGGTTTTTCAGTTTTCTTTTGAGCATTATCAGCACAACCCTTCATGTACATTTCAGTGTAAAAaacaagggtattattggtttAAGAGAATATGCAGATTTTCTTGGTTTGGTTTCTTCAACATGTCTTTTAGTTATTTCAACAAGAGGTAAAACAGGTATAGTTATCATTGAAACAAATGGTAGTATATCTGAACCACTtttggaagagaaaaatgagaaaCATTCTTCTGAGTTTGTAAGAGAATCATCACCATATGGAAAAGCTACACTTCTCCAATTGATAACTTTTTCATGGCTCAATCCATTGTTTGCAGTAGGGTATAAGAAACCTATTCAATTGGATGATATTCCTGATGTTGACATCAAGGACTCAGCTGAATATCTAAATTTCTCTTTTGATGACAGTATTAGACAAGTTAAGGAGAAAGATGGAACTACAAATCCATCTATCTACAAggcaatttatttatttgctagGAAGAAAGCGGCGATCAACGCACTTTTTGCGGTAATAAATGCTTCAGCGTCTTATGTTGGTCCTTATTTGATCACTGACTTTGTGAATTTCCTAACCGAGAAGGAAAGCCGCGGAGTAAAGAGTGGATACCTTTTGTCATTAGGCTTCTTATGTGCTAAAATGGTTGAGACCATAGCTCAAAGGCAATGGATTTTCGGTGCTCGACAATTAGGTCTCCGCCTTAGAGCAGCATTGAtatctcatatatataagaaGGGCTTACATCTGTCTAGCCGATCGCGTCAAAGTCATTCCGGTGGTGAGATAATGAACTACATGAGTGTAGATGTGCAGAGAATTACGGATTTCGTTTGGTACGTAAATGTAATATGGATGCTGCCGATACAAATTTCGTTAGCTGTTTTCATTTTGCATACAAATCTTGGATTAGGTTCATTGGCTGCATTAGCTGCAACGCTAGCAGTTATGACTTTGAACATACCCTTAACGAAAATACAGAAAAGATACCAAACCAAGATCATGGATGCAAAAGATAACAGAATGAAAGCAACATCAGAAATTCTAAAAAACATGAGGACTTTGAAACTTCAATCATGGGATAGTGAATTTTTCAAAAGGATAGAATCATTGAGAAATGTTGAATATGGTTGGTTATTAAAGTCACTAAGACAAGCGGCGTTTTCAGCTTTTATCTTCTGGGGGTCACCTACATTCATTTCAGTGATAACCTTTTGGGCATGCATGTTTTTAGGGATTGAACTGACAGCTGGAAGAGTCTTATCAGCATTCGCGACATTTCGAATGTTACAAGATCCTATCTTTAGTCTACCTGATTTACTCAATGTCATGGCTCAAGGAAAAGTTTCAGTCGATAGGATCGCTTCTTTCCTTAAGAAAGAAGAAATCCAACATGACGTGATCGAATATGTTTCAAAGGACAAAACAGAATTTGATGTAGTTATTGAGAGAGGAAGATTCAGTTGGGATCCCGAGACAACAATTCCAACACTTGATGAAATTGAGTTGAAAGTTAAGAGAGGAATGAAGGTTGCAATTTGTGGTTCTGTTGGTTCTGGAAAAACTAGTATACTATCAGGAATTTTGGGAGAGGTATATAAACAATCAGGGAATGTTAAGATTAGTGGAACAAAGGCTTATGTTCCACAATCTGCATGGATACTTACTGGAAATATTAGGGATAATATAACTTTTGGAAAAGAGTTTGATGTGGATAAGTATGAGAAAACTGTTGAAGCATGTGCATTGAAAAAGGACTTTGAGTTATTCTCAGGTGGGGATTTGACTGAGATTGGTGAAAGAGGGATTAATATGAGTGGTGGACAGAAACAAAGGATACAGATAGCTAGAGCTGTTTATCAAGATGCTGATATATACCTTTTTGATGATCCTTTCAGTGCTGTCGATGCTCATACCGGCACTCACCTATTTAAGGAATGTCTTATGGGGATTCTCAAAGAGAAAACTATACTTTTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCCGGAACATTTGAAGAACTTCTAAAGCAAAATATAGGATTTGAATTATTAGTTGGTGCTCATAGCAAAGCACTAGAATCAGTTCTTATGGTTGGAAACTCaagtaaaacaaatttaaatccAATACCTGAAGGAGAATGCATCACCTATTCACACTCAAGTTCTGAACTTTTGCACACACATCTTGACAAAGTGCAAGATAATTCTACAGATAACAAAGGAAATAATGATGGAAAATTAgttcaagaagaagaaagagaaacagGAAGCATATCAAAAGAAGTTTATTGGACTTATTTGACAACTGTTAAAGGAGGACTTCTTGTACCAATCATAATATTGGCACAGTCTTCATTCCAAATCCTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAACATCTGATGCTAAGCCAATATATGATATGAACTTCATATTACTTATTTATATGGCACTTTCTGTTGCTGGTTCCTTTTGTGTTCTTCTGAGAGCCATGTTGGTGTTAAATTGTGGACTTTGGACAGCACAAACCTTTTTCACAAGAATGTTGCATAATGTACAAAGAGCCCCCATGTCATTTTTTGATTCAACCCCAACTGGAAGAATCTTGAATAGGgCCTCCACAGATCAAAGTGTGCTAGACATGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAGATTCTGGGAACCATTGCAGTGATGTGTCAGGCGGCGTGGCAAGTATTTATCATCTTCATTCCAGTAACTGGAATCTGCATATGGTATCAACGATATTATAATCCAACAGCAAGAGAACTGGCTCGGTTAGCACAGATACAAATTACTCCAATTCTTCACCATTTTTCAGAATCTTTAGCAGGAGCTGCATCAATACGAGCTTTCGATCAAGAACGCCGTTTCATGAGCACAAATCTTGTCCTTTTGGATGGCTTCTCAAGACCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACTTgctttcaaattttgtttttgcctTTTCACTTGTCTTGCTAGTGAGCCTCCCTGAAGGTTTCATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTAAATGTTTTGCAAGCTTCAGTTATATGGAACATTTGTAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAATATACAAATATAGCAAGTGAATCACCTCTTGTGATTGAAGACTGTCGTCCGCCAAGAAACTGGCCCGAAACTGGAACAATATGTTTCCGAAATTTGCAGATACGTTATGCTGAAAATCTCCCATCTGTGTTGAAAAACATCACCTGCACATTTCCTGGAAGGAAGAAAATCGGTGTTGTAGGACGAACTGGAAGTGGAAAATCAACCCTCATACAGGCCATTTTCAGGATGGTTGAACCAAGAGAGGGATCCATTATAATTGACAATGTGGACATATGTGAGATAGGTCTACATGACTTAAGGTCAAGGCTTAGCATTATCCCACAGGATCCAGCCTTGTTTGAAGGTACAGTTAGAGGAAATCTGGATCCTCTGGAGCAATACTCTGATAGAGAAGTGTGGGAGgCTCTGGATAAATGTCAGCTAGGTCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGACTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGCTGGACAAAGGCAATTATTTTGCCTCGGTAGAGCCTTGCTGAAGAAAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGATGGGGTGATACAGGATATCATCTGTCAAGAGTTCAACAACCGAACAGTTGTCACAATAGCTCATCGAATCCACACAGTTATTGATAGCGACTTGGTTTTGGTTCTCAGTGATGGGAGAATTGCAGAATATGATGAACCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTACAAACTTATAAAGGAGTACTCTAGCAGATCCCATAGCTTCAACAACTTGGCATCTCAACATGTCCATGGATAA 4545 0.3655 MALENFYNILLSSATKLANHSWTTWQPLVSPCFLEHITLPLEFGFLVILLVQLLRNCMNNITKQNKASNIHPNGMKYGFAYKISLVCTTLLFSVHALILILMLNHEPQCRSKLQAYTSEIIQVLSCAIILIAICKMSKKTNAHFPWILRAWWFFSFLLSIISTTLHVHFSVKNKGIIGLREYADFLGLVSSTCLLVISTRGKTGIVIIETNGSISEPLLEEKNEKHSSEFVRESSPYGKATLLQLITFSWLNPLFAVGYKKPIQLDDIPDVDIKDSAEYLNFSFDDSIRQVKEKDGTTNPSIYKAIYLFARKKAAINALFAVINASASYVGPYLITDFVNFLTEKESRGVKSGYLLSLGFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYKKGLHLSSRSRQSHSGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQTKIMDAKDNRMKATSEILKNMRTLKLQSWDSEFFKRIESLRNVEYGWLLKSLRQAAFSAFIFWGSPTFISVITFWACMFLGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASFLKKEEIQHDVIEYVSKDKTEFDVVIERGRFSWDPETTIPTLDEIELKVKRGMKVAICGSVGSGKTSILSGILGEVYKQSGNVKISGTKAYVPQSAWILTGNIRDNITFGKEFDVDKYEKTVEACALKKDFELFSGGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGRIAQAGTFEELLKQNIGFELLVGAHSKALESVLMVGNSSKTNLNPIPEGECITYSHSSSELLHTHLDKVQDNSTDNKGNNDGKLVQEEERETGSISKEVYWTYLTTVKGGLLVPIIILAQSSFQILQIASNYWMAWVCPTTSDAKPIYDMNFILLIYMALSVAGSFCVLLRAMLVLNCGLWTAQTFFTRMLHNVQRAPMSFFDSTPTGRILNRASTDQSVLDMEMANKIGWCAFSIIQILGTIAVMCQAAWQVFIIFIPVTGICIWYQRYYNPTARELARLAQIQITPILHHFSESLAGAASIRAFDQERRFMSTNLVLLDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGFINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASESPLVIEDCRPPRNWPETGTICFRNLQIRYAENLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRMVEPREGSIIIDNVDICEIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDREVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQDIICQEFNNRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSHSFNNLASQHVHG 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00148 1514 Gene3D - 1244 1497 IPR027417 -
Tsu08g00148 1514 PANTHER - 87 1506 - -
Tsu08g00148 1514 CDD ABCC_MRP_domain1 630 830 - -
Tsu08g00148 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1224 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00148 1514 SUPERFAMILY ABC transporter transmembrane region 942 1243 IPR036640 GO:0005524|GO:0016021
Tsu08g00148 1514 SUPERFAMILY ABC transporter transmembrane region 311 612 IPR036640 GO:0005524|GO:0016021
Tsu08g00148 1514 Pfam ABC transporter 1278 1426 IPR003439 GO:0005524
Tsu08g00148 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1263 1495 IPR003439 GO:0005524
Tsu08g00148 1514 Pfam ABC transporter 648 782 IPR003439 GO:0005524
Tsu08g00148 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 845 IPR027417 -
Tsu08g00148 1514 CDD ABC_6TM_ABCC_D2 942 1236 IPR044726 GO:0140359
Tsu08g00148 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 87 1506 - -
Tsu08g00148 1514 Pfam ABC transporter transmembrane region 946 1188 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00148 1514 Pfam ABC transporter transmembrane region 316 580 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00148 1514 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524
Tsu08g00148 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 853 IPR003439 GO:0005524
Tsu08g00148 1514 MobiDBLite consensus disorder prediction 898 919 - -
Tsu08g00148 1514 CDD ABCC_MRP_domain2 1259 1479 - -
Tsu08g00148 1514 SMART AAA_5 657 830 IPR003593 -
Tsu08g00148 1514 SMART AAA_5 1287 1479 IPR003593 -
Tsu08g00148 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1253 1493 IPR027417 -
Tsu08g00148 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00148 1514 CDD ABC_6TM_ABCC_D1 316 604 IPR044746 GO:0140359
Tsu08g00148 1514 Gene3D - 625 856 IPR027417 -
Tsu08g00148 1514 Gene3D ABC transporter type 1, transmembrane domain 286 613 IPR036640 GO:0005524|GO:0016021
Tsu08g00148 1514 Gene3D ABC transporter type 1, transmembrane domain 905 1242 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00148 Tsu-Chr8 1401609 1411714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00148 618 874 Calmodulin-binding Proteins AT2G36910 29.893 1.10e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00148 - - gmx:100817486 2510.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00148 08 1401609 1411714 Tsu08g00148 08 1401609 1411714 ECH