Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00116 ATGTCCTTCAATCAATCAAAAACCGAAAAGAACGACGCCGCCGTTTATAGAAAATCTGGGCGATCGTCTAGCTTTAATCAGCAGAGAGGTCCCTCAGGTGCTTATGGAAGGGGCAGCGGCGGGCCTGCACCTTCACTCTCTTCTAACAAGAGTTTTACCAAGAAGTCTAATAATGCACAAGGTGGGCAATATAGGGTAAACCCTTCCCCAGTGAATTCAACAGAGTCAAACAATGCTCCTGCTGCTCGAGGCATAAATAATGGTACTCACGTGCAACCACAACTGCATGGAGCATCTGATGGGCCGGTTGCAAAGGCATCTGAATCAACAGCACAGAGGAGCCCTAAAGTTGTTCCAAATGTACCAACATCTCAACCTCCCCCTGTGAGCTCTGATACAACCGTTCCTACAAGCCCCGCTAAGGGAGATGCATCAAAGGCGTTCCCTTTTCAGTTTGGATCAATTGTCCCTGGCTTTATGAATGGGGTGGCAATTCCTCCTCGTACAAGCTCAGCTCCTCCTAATTTAGACGAGCAGAAGCATGCTCAGGCCCATCATGACTCTGTTAGATCTGCTGTGCCTTCAGTGCCAATACCTCCTGTTCCGAAGCAGCAGCAACCACCTAGGAATGATGCAGGTGTAACTGACAAATCTAATGCCAGGGAGACTCATCTGGGGGCTAAGGCTAAAAAGGATCCCCAAGTGCCAATTTTGACCCCAGCAAGCCAGATGCAGAAGCCTTCTGGTGTTCCTGTAACTGGGATTTCAATGTCAACACCATTTCAGCAGCAGTCACAGGCACCTTTACAGTTTGGCGGTCCTAATCCACAGATTCAATCTCAGGGGATGTCCTCAACACCCCTCCACATTCCTATACCGATGCCTATACCAATTGGAAATGTTCCACAAGTGCAACAACCAGTTTTTGTTCCAGGTCTCCAGCCTCATCCAATGCACCCTCACGGGATCATGCATTCAGGCCATAACATAAGTTTCACTCATCAAATGGGTCATCAGTTGCCCCATCAATTGGGCAACATGGGCATTGGCATGGGCCCTCAATATCCCCAGCAGCAGGGTGGAAAATTTGCCGGTCCTCGAAAAACTACTCCCGTCAAGATAACTCATCCTGATACACATGAAGAGCTGAGGCTTGATAAAAGGACAGATGGATATTCAGATGGTGGGTCATCTGGTGCTAGGTCACATCCTAATGTACCTTCTCAATCTCAACCTGTTAAATCGATTGCCACTTCTCAGCCTACAAATTATTATCCTTCTAGCTCATATGGTTCCAGTTCTCCCTATTATCAACCTAATTCTCTTCCATTAACAAGTAGCCAGATAACTCCCAATGCTCAACCACCAATATTTAATTATCCTGTGAACAATGGTCCACAAAATGTGGCTTTCATGAATTCGCCGTCTCTTAATGCTCCGCCTGTTAATAAAGTAAGCACTCCTATTCCTCGCATTACTGAACCCCCCACTGTAGAACGTTCTCGTGAAGTACCTAATGTGATATCATCAGCTTCAACGGGGGTTGCTTCTGTGACTATTAAACCAAGTGGTGTGTCTGCTGTTGCGGACTCATCATTGATTAATTCTGAGTCTCCCAGTTCAGCAGCATCTGGCGATGCTAGCTCCCCTTTACCACAAAAAGGATCTGAAACTTTCTCGGAAATCTCTACGGGAAAATCTAAATCTTCTGAGGATTCTTCAGTTTTGAGTTCGTTGCCAAAACAATCTGCTGTATCTGTTGTTAGTGCTGAGAAGCTTACGATGCCACCTTCGTCAGTTGTCACTATGGATTCTGTTTCAGTTGTGACTAATAATGAAGCCAGCATGAGGGAACCAATTAGCGGATCCAACTCTTCAAAGGATAACCAGAAGAAACCTGGGAAGAAAGGTCAATCATCCCAAGATCAGTTACTAATggatatttttattgaaaatttgaaatcagATCTGCAGTCTGCTGATGTACCAGAAACAACAAAGGAAATTAATGATAGTGCAGAGAATGCTTGCAGCGACTCAATGTCTCTTTCAGCGTCAGGTATCAAGGATAGACCAAATTTAGAAGCAAATAAAGCAAAAGTTACATCTAAAGggaggaagaaaagaaaagagattcTCCAGAAAGCAGATGCTGCTGGGTCAACTTATGATCTTTATAATGCATACAAAGGACCTgaggaaaagaaagaaactgTCTTAATTTCAGAGAGCACAGAAAATGAATCTACATCTGAAGGTTTAAAGCAGTTATCTGCAGATTCTGCTCAGTTAGATTCTCCCGTAAGTGAGAAATGTGGTCACAATAAAGCCGAACCTGATGACTGGGAGGATGCAGCTGACATGTCTACACCAAAACTTGGAGTTGATGATAAATCTCAACAGGTTATTGATGGAATTGGAAGTACAGCAAAAAAGTACTCACGcgattttcttttgaaattcgCAGAGCAATGCATTACTCTTCCTGAAGGTTTTGAAATTACGGCTGACATTGCTGACCCTTTGATGAGTTTCAATAATTCTCGTGATTCACATCCTAGTCCTGGAAGAACTGGAGACAGGTCAAGGATGGAACGTCGTGGGAATGTTGTGGCTGAGGAGGACAGATGGAATAAAGCTGCCAATGCTTTTCATTCTGGGCGTGGTTTGGATGGTATCGGTGGTAATAGTGGTCGGCATGGCCAAGGAAGAAATTTTGGTGTTTTAAGAAGTCCAGGTGGACAGGTACCCCCCCAATATGCTGGGGGTATCCTTTCTGGTCCAATGCAATCTGTGGGAAATCAGGGTGGAATGCAAAGAAATAGCCCTGATGGGGAGAGGTGGCAGCGTTCTACTAGCTTCCAGCAGAGGGGTTTAATTCCTTCACCTCAGTCTCCCTTACAGATGATGCACAGGGCCGAGAAAAAGTATGAAGTAGGTAAAGTCTCAGATGCGGAAGAGGCAAAACAGAGACAGCTGAAGGCTATCTTGAACAAACTAACTCCTCAGAATTTTGATAGACTTTTTGAACAGGTTAAAGCAGTTAATATTGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTCGAGAAGGCTCTGATGGAGCCTACCTTCTGTGAAATGTATGCCAACTTCTGCTCCCATCTTGCTACTGAGTTGCCTGATTTGAGTGTGGACAATGAAAAGATAACTTTTAAAAGGTTATTATTAAACAAATGCCAGGAGGAATTTGAGAGGGGTGAAAGAGAGCAAGAAGAGGCAAATAAGGCTGATGAGGGTGAGGTGAAGCTATCAAATGAAGAAAGGGAGCTGAGAAGAACCAAGGCAAGAAGGCGCATGTTAGGAAACATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCACGAGTGTATCAAGAAGTTATTAGGTCAGTGTCAGGATCCTGATGAGGAAGATGTTGAAGCTTTGTGCAAGCTGATGAGTACTATTGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGCTGAAAATATTATCGAACAACATGAATTTATCTTCTAGGGTGAGGTTTATGTTGAAGGACGTAATTGATTTAAGAAGGAATAGATGGCAACAAAGGAGAAAAGTTGATGGTCCAAAGAAGATTGAGGAGGTACACAGGGACGCTGTGCAAGAGAGGCAGGCTCAAGCTCAAGTTGGTAGGATGGGTCGTGGTATGGGAAACAATCAATCTGCAAGAAGGAACCCCATGGATTTTGGTGCTAGAGGATCATCTATGTTGTCTCCTCCTGGTCAGATGGGTGGACCGCGTGGGCTGCCTACACAAGGACGGGGATATGGTTTACAGGATGCTCGTTTTGAAGAAAGGCAATCTTATGAGCCTAGGCCTTTGTCAGTTAATTTGCCTCAAAGACCCATGGGTAATGATTCTATAACATTGGTACCCCAAGGTGGTCTTGCTAGGGGAATGGCCAGTAGAGGATCAACAGTTTCTCATTTGTCAATACCTGATGTGCATTCTAGCCACGGAGACCCTCACAGAATGCCTAGCGGTATTAATGGTTATAATAATTCATCTGAGCGCACATTGTATGGCTCAAGGGAGGATCTTGCATCAAGATATATTTCAGACAGATCTTCAAGTCTAGCTGGATATGATCATTCAAGTGCTCCAGGGCATCATATAAACTATGGTAACCGAGACTTAAGGAATGATGATCGGAATCTCGACAGGCCTGTTACAACTCCACCTCACACTCAGTTGCAAGGGTCAATTGTCTCCCAAAATGTTTCTTCAGAGAATGCTTGGCCAGAGGAACGATTACGTGACATGTCCTTGTCAACAATCAGAGAATACTACAGTGCTAGAGATGTAAATGAAGTTGCTCAATGCATCAAAGATTTGAACTCTCCAGCCTTTCATCCTTCCATGGTTTCTGTATGGGTCATGGACTCATATGAGAGAAAGGACACTGAAAGAGATCTTTTGGCCAAACTGCTTGTCAAACTTGGGAAATCTCAGGATGGCCTATTAAGTCAAACTCAACTTAAGGAAGGGTTTGTGAAAGTTCTCAGTACATTGGAGGATGATGTTAATGATGCCCCCAAGGCACCAGAGTTTCTTGGCCGTATTTTTGCAGAACTTATAACAGAGAGTATAGTCAGTTTGAATGAGATCGGCCAATTAATACATGATGGTGGAGAGGAGCCAGGTAGTCTCTTAGAAGTTGGACTTGCAGCTGATGTTCTCGGAAGCACCTTGGAGGCAATAAAACACGAAAAAGGCGACGCTGTTCTAAGTGAGATTCAAACAAGTTCAAACTTGCGGTTGGAGACTTTCCGACCACCTAATAATTCTACTACATCAAGGAAGTTGGAGAAGTTTATTTAG 4920 0.4331 MSFNQSKTEKNDAAVYRKSGRSSSFNQQRGPSGAYGRGSGGPAPSLSSNKSFTKKSNNAQGGQYRVNPSPVNSTESNNAPAARGINNGTHVQPQLHGASDGPVAKASESTAQRSPKVVPNVPTSQPPPVSSDTTVPTSPAKGDASKAFPFQFGSIVPGFMNGVAIPPRTSSAPPNLDEQKHAQAHHDSVRSAVPSVPIPPVPKQQQPPRNDAGVTDKSNARETHLGAKAKKDPQVPILTPASQMQKPSGVPVTGISMSTPFQQQSQAPLQFGGPNPQIQSQGMSSTPLHIPIPMPIPIGNVPQVQQPVFVPGLQPHPMHPHGIMHSGHNISFTHQMGHQLPHQLGNMGIGMGPQYPQQQGGKFAGPRKTTPVKITHPDTHEELRLDKRTDGYSDGGSSGARSHPNVPSQSQPVKSIATSQPTNYYPSSSYGSSSPYYQPNSLPLTSSQITPNAQPPIFNYPVNNGPQNVAFMNSPSLNAPPVNKVSTPIPRITEPPTVERSREVPNVISSASTGVASVTIKPSGVSAVADSSLINSESPSSAASGDASSPLPQKGSETFSEISTGKSKSSEDSSVLSSLPKQSAVSVVSAEKLTMPPSSVVTMDSVSVVTNNEASMREPISGSNSSKDNQKKPGKKGQSSQDQLLMDIFIENLKSDLQSADVPETTKEINDSAENACSDSMSLSASGIKDRPNLEANKAKVTSKGRKKRKEILQKADAAGSTYDLYNAYKGPEEKKETVLISESTENESTSEGLKQLSADSAQLDSPVSEKCGHNKAEPDDWEDAADMSTPKLGVDDKSQQVIDGIGSTAKKYSRDFLLKFAEQCITLPEGFEITADIADPLMSFNNSRDSHPSPGRTGDRSRMERRGNVVAEEDRWNKAANAFHSGRGLDGIGGNSGRHGQGRNFGVLRSPGGQVPPQYAGGILSGPMQSVGNQGGMQRNSPDGERWQRSTSFQQRGLIPSPQSPLQMMHRAEKKYEVGKVSDAEEAKQRQLKAILNKLTPQNFDRLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLATELPDLSVDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKLSNEERELRRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQDPDEEDVEALCKLMSTIGEMIDHPKAKEHMDVYFERLKILSNNMNLSSRVRFMLKDVIDLRRNRWQQRRKVDGPKKIEEVHRDAVQERQAQAQVGRMGRGMGNNQSARRNPMDFGARGSSMLSPPGQMGGPRGLPTQGRGYGLQDARFEERQSYEPRPLSVNLPQRPMGNDSITLVPQGGLARGMASRGSTVSHLSIPDVHSSHGDPHRMPSGINGYNNSSERTLYGSREDLASRYISDRSSSLAGYDHSSAPGHHINYGNRDLRNDDRNLDRPVTTPPHTQLQGSIVSQNVSSENAWPEERLRDMSLSTIREYYSARDVNEVAQCIKDLNSPAFHPSMVSVWVMDSYERKDTERDLLAKLLVKLGKSQDGLLSQTQLKEGFVKVLSTLEDDVNDAPKAPEFLGRIFAELITESIVSLNEIGQLIHDGGEEPGSLLEVGLAADVLGSTLEAIKHEKGDAVLSEIQTSSNLRLETFRPPNNSTTSRKLEKFI 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 373 391 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 158 249 - -
Tsu08g00116 1639 ProSiteProfiles MI domain profile. 1450 1574 IPR003891 -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 928 963 - -
Tsu08g00116 1639 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 659 1628 IPR045208 GO:0003743
Tsu08g00116 1639 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 116 550 IPR045208 GO:0003743
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 771 787 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 215 229 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 1 146 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 734 787 - -
Tsu08g00116 1639 Gene3D - 990 1225 - -
Tsu08g00116 1639 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 116 550 - -
Tsu08g00116 1639 Coils Coil 1072 1112 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 854 868 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 531 628 - -
Tsu08g00116 1639 SUPERFAMILY ARM repeat 984 1214 IPR016024 -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 17 33 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 743 765 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 1391 1420 - -
Tsu08g00116 1639 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 659 1628 - -
Tsu08g00116 1639 SUPERFAMILY ARM repeat 1444 1637 IPR016024 -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 105 119 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 353 450 - -
Tsu08g00116 1639 Gene3D - 1444 1639 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 531 644 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 922 965 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 663 713 - -
Tsu08g00116 1639 SMART ma3_7 1451 1565 IPR003891 -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 42 94 - -
Tsu08g00116 1639 SMART if4_15 990 1212 IPR003890 GO:0003723|GO:0005515
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 395 450 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 1237 1256 - -
Tsu08g00116 1639 Pfam MA3 domain 1455 1563 IPR003891 -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 1330 1371 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 845 868 - -
Tsu08g00116 1639 Pfam MIF4G domain 990 1211 IPR003890 GO:0003723|GO:0005515
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 482 505 - -
Tsu08g00116 1639 MobiDBLite consensus disorder prediction 663 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00116 Tsu-Chr8 1068492 1077813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00116 1 1638 Eukaryotic Initiation Factors Gene Family AT3G60240 44.531 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00116 K03260 - gmx:100798562 1998.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00116 08 1068492 1077813 Tsu08g00116 08 1068492 1077813 ECH
Tsu08g00116 08 1068492 1077813 Tsu04g00838 04 8021715 8029853 PCT