Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00103 ATGCCTCCGAAGACGACGAAAAGAGGGGCGGCGACCAGTGGTGCGAAGAGAGGCGGAAGAGGACCGAGAGGAAAGGCTGCACAGAATCAACAGCAGCAACCTGAACCTGTGGAGGAAAAGGCGGTGATTGAGGAAGAACCTAAGGTAGAAGAGAATCCTGTTGTTGAAGAAAAACCTGTGGTGGAAGAGAATCCTGTTGAAGATAAAGCTATTGATATGAATGAAATTGCTCCTGAAGCTGCTGCAGAAGAAGCTAAAACGGTGAaaaAGGATGAAGAGGAGGTTAAGGAGTCGATAGATGAATATGAGAAAGATGAGCGACTAGATTTGGAGGATCATGATCCTGAGTATGAACCTGAGGAGTATGGTGGGGTTGATTATGATGAGAAGGAAATTGAACAAGAAGAGGGTCATGAGGTGGGAGATGAAGTTGAGGAAGAAGCCGAAGATAATGTTGGTGAAGAAGAAGGTGATTCAGGTGAGGAAGAAGTAGAAGATGGTCATGATGAAATTGAGGGTGAAGAGGATGACGAGCATGCTGATGAGGATCATGAGCATCCGGAGATGGCTGATGTGGAAGATGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGTAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCGGTGAAGTTGGTGTTGTGACTGAGGTCAGGCTAATGATGAATCCTCAGACGAAAAAGAACAAAGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGAGGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGCGGTGTTACTCCAAGTCAGGACAGTGATACCCTTTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTCGAAGATTCTAATGATAAAGGAACAAACCGTGGGTTTGCATTCTTAGAATTTTCCTCTCGTTCAGATGCAATGGACGCCTTTAAGAGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGATCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAGTCTTCTCAAGAAATATGGCGAAGTTGAAAAGATTGAGCTTGCTAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGATTTGTTACCTTTGGTTCACACGATGCTGCTATAAGATGTGCTGAGAGCATCACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCAAAAGTGAGGGCTAGGTTATCAAGGCCTCTTCAGAGAGGCCGTGGAAAACATGTTGGTCGCGGAGACTACCGCCCTGGTCGTGGACCTGCAATAATGTCGAGGCCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGCGGGGTAAGAGGAATCGGAAGTCGTGCTCTGCCGCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTGTACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGCTGCTGCATATTCAAAAAGTAGTGTGAAGAGAGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGGATGGCCTCTGAAAGACGCCCATCGTATAGGGATTATCCTCCCCGTGGATCTGATTACTCTGATATCCCTAGAAGTACAGCTCGGGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCTCCTCCTCCACCCGCTCCCCATTCAAGTTATCGCGAAGGGCGCCCTCGTGATTATGATGCTATATCTGGCTCTAAACGTTCTTATGCTGCCGTGGATGATGTTCCCCCGCGATACGCTGAATCTGGTGCTCGCCAATCAAGAGCTCGATTGGAATATGACTATGGTAGCAGTGCTTCACAGTATGGTGACACTTACGGTGATAGAGTTGGAAGATCTAGTCTTGGATATAGTAGTGGAAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGGCAAGGGATGAGTTATGGTGGAgGCTCTTATGGCGGTAGTGACGCTGGAGGCATGTACTCATCAAGTTATGGTGGCGATTATGTTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCAATGTATTCTGGTAGGGGTGCGGGTGGAAGTAGCAGTTACATGGGCAGTGGTGGATCGGGGTCTTACTATTGA 2385 0.4625 MPPKTTKRGAATSGAKRGGRGPRGKAAQNQQQQPEPVEEKAVIEEEPKVEENPVVEEKPVVEENPVEDKAIDMNEIAPEAAAEEAKTVKKDEEEVKESIDEYEKDERLDLEDHDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEAEDNVGEEEGDSGEEEVEDGHDEIEGEEDDEHADEDHEHPEMADVEDEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVEELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGPAIMSRPSWSRPAPRSFSSRGVRGIGSRALPPVRPISARDRRPVMSVPVRSRPLPPPARSYDRRPAAAAYSKSSVKRDYGRREDLPPPRSRVAADYGSRMASERRPSYRDYPPRGSDYSDIPRSTARAAPRRGYVDDGYSQRYERPPPPPAPHSSYREGRPRDYDAISGSKRSYAAVDDVPPRYAESGARQSRARLEYDYGSSASQYGDTYGDRVGRSSLGYSSGSRSSISGQDSHGMYSSRQGMSYGGGSYGGSDAGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGSSSYMGSGGSGSYY 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00103 794 MobiDBLite consensus disorder prediction 768 794 - -
Tsu08g00103 794 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 469 IPR000504 GO:0003723
Tsu08g00103 794 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 454 IPR000504 GO:0003723
Tsu08g00103 794 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Tsu08g00103 794 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 358 IPR000504 GO:0003723
Tsu08g00103 794 Gene3D - 377 493 IPR012677 -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 659 678 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 82 111 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 563 577 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 38 74 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 183 203 - -
Tsu08g00103 794 SUPERFAMILY RNA-binding domain, RBD 290 454 IPR035979 GO:0003676
Tsu08g00103 794 MobiDBLite consensus disorder prediction 112 182 - -
Tsu08g00103 794 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 794 - -
Tsu08g00103 794 PANTHER RNA RECOGNITION MOTIF 1 794 - -
Tsu08g00103 794 Coils Coil 85 108 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 467 654 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 1 203 - -
Tsu08g00103 794 SUPERFAMILY RNA-binding domain, RBD 205 288 IPR035979 GO:0003676
Tsu08g00103 794 Gene3D - 125 290 IPR012677 -
Tsu08g00103 794 SMART rrm1_1 291 370 IPR000504 GO:0003723
Tsu08g00103 794 SMART rrm1_1 211 284 IPR000504 GO:0003723
Tsu08g00103 794 SMART rrm1_1 388 463 IPR000504 GO:0003723
Tsu08g00103 794 CDD RRM_SF 292 359 - -
Tsu08g00103 794 MobiDBLite consensus disorder prediction 706 730 - -
Tsu08g00103 794 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Tsu08g00103 794 CDD RRM_SF 212 283 - -
Tsu08g00103 794 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 374 IPR000504 GO:0003723
Tsu08g00103 794 Gene3D - 291 373 IPR012677 -
Tsu08g00103 794 CDD RRM_SF 389 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00103 Tsu-Chr8 952697 959021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00103 212 491 Eukaryotic Initiation Factors Gene Family AT4G34110 23.102 4.01e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00103 - - aprc:113850151 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00103 08 952697 959021 Tsu08g00103 08 952697 959021 ECH
Tsu08g00103 08 952697 959021 Tsu04g01937 04 20916769 20923106 PCT