LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00096	ATGGAAGGAGAAAGAGATGTTCCTAATTATGAGCTTCAAGTTTCATTCACAAACACTCCTCAAGCTATCCATGAAATGGGTTTTgttcaatttgaagaaaatcaagtTCTTAGCTTCTTGTCACCCTCTACACAATCTCAACCTTCTCAACTTTCTCAATCTTTAAATTCCGGGGGTAGCACCACCAACACAGCTACCGGTGCAGCTGCCACAACTACCACTGCGGCGGTCGGATTTAGCCATAATGATCTTGTCACAAGAACTCCTTGGAATAATGATCaggtGAGAAATCTAAATCCTAAAGCTGTGAGTGATGAGAATTGCACTGGAAATACTAGTGATGGCAACAACACATGGTGGAGGAGTGGAGGGTCAGAGAAGAGCAAGGTGAAAGTGAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTTCAGACAAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGTCAAAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGTTGCACACATACCAACTGTCGAGTGAAAAAAAGAGTTGAAAGACTCTCAGAAGATTGTCGTATGGTGATAACTACTTATGAAGGAAGACACAATCACACTCCTTGTGATGACTCTAATTCTTCTGAACATGAATGTTTTACCTCTTTCTGA	681	0.3965	MEGERDVPNYELQVSFTNTPQAIHEMGFVQFEENQVLSFLSPSTQSQPSQLSQSLNSGGSTTNTATGAAATTTTAAVGFSHNDLVTRTPWNNDQVRNLNPKAVSDENCTGNTSDGNNTWWRSGGSEKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNHTPCDDSNSSEHECFTSF	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00096	226	MobiDBLite	consensus disorder prediction	40	66	-	-
	Tsu08g00096	226	Gene3D	WRKY domain	139	205	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tsu08g00096	226	Pfam	WRKY DNA -binding domain	153	209	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu08g00096	226	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	12	224	IPR044810	GO:0003700
	Tsu08g00096	226	SMART	WRKY_cls	152	211	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu08g00096	226	MobiDBLite	consensus disorder prediction	85	124	-	-
	Tsu08g00096	226	ProSiteProfiles	WRKY domain profile.	147	209	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu08g00096	226	PANTHER	WRKY TRANSCRIPTION FACTOR 12-RELATED	12	224	-	-
	Tsu08g00096	226	SUPERFAMILY	WRKY DNA-binding domain	144	210	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00096	Tsu-Chr8	885301	891305	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00096	3	226	WRKY Transcription Factor Family	AT2G44745	57.759	2.95e-75	225

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Tsu08g00096		WRKY	2.3e-24	CL0274