Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00087 ATGCAGATTGTTGTACCTGTGTTCTATAAGGTAGATCCTTCTCATGTGAGGAAACAAAGTGGAAGTTACAAGATTGCTTTTGAGGAACACTTGTGTAATCTTAAGCACTTTAACAAGGTCAATGATTGGCGATTAGCTTTAACTCAAGCAACCAGTTTGGCTGGATGGGACTCTTGTAAatacatGCTTGAATCTGAACTTGTGGAAGACATTGTCCAAGACATTTTGCGAAAACTGCAACATAAATATCCGATCGAATCAAAGGGACTTGTTGGAATTGACAAACACTATGCACGTCTTGAATCGTTCCTGACAATAGGATCAAGAGAAGTTGGAATGATTGGAATTTGGGGGATGGGTGGCATAGGCAAGACAACCATTGCTGCAGCTATATTTGATCACTTCTCTTCTCAATTTGAAGGATGTTGTTTCTTAGAAAATGTCGGAGATGAATCAGATATCAATGGATTGAGTTTCTTGCATAATAAACTTCTAACAATGCTActggaagaaaaagaaaatctcCATATTGGCACAATGAGATCAAGTTCCAATTTTAGTAAGAGCAGGCTTAGTCATAAAAAAGTTCTCATTGTGCTCGACGATCTAAGAACTCAAGAGCAACTAGATTTTCTAATCGGAACACGCACCTGCTTGGGACCAGGGAGTAGAGTCATTGTTACAACTAGAGATAAGCATGTGCTTATTAGCCGAGCTCATGAAATATATGAGGTGAAGCCATTAAACTTTGATGAATCTCTTCAGCTTTTCAGTTTAAGTGCTTTCAACAAAGTGCATCCAGATGTAGGTTATCGACAAGTCTCAGAAAATGTCGTAATAAATTATGCAGGTGGCATTCCATTGGCTTTGAAAGTTTTAGGCTCATTATTTTGTTCTAAAAGTAAAGAAATATGGCAAAGTACAATGACTAAACTAAACAAAATTCCGTGTAAGGAAATTCAGAATATCTTGAAACTGAGCTATGACGGCTTAGATGATACCGAGAAAGAAATATTTCTAGATATTGCCTGCTTTCTGAATGGAAAAGATAAACAACATGTGACAAGATTTCTGGATGCATGTGGCTTCTATGCAGTTCCTGGTTTAGAAACTCTTTTGGAAAAGGCtctcatttcaatttcaaataacAATCAAGTACAAATGCATGCCTTGATACAAGAAATGGGACGGGAAATTGTTCGTCAAGAATCTACCAAACACCCTGGGAGACACAGTCGATTGTATGATCACCAAGAAGTATACGATGTATTGAATAAtaacatgGGTACGGATACAATTGAAGGCATAAGCCTAGATGTGTCCCAAATTAGAGGTATGAATTTGAGCTCTGACATTTTTGTGAAGATGATTAACCTAAGATTTCTCAAATTCTACTCTCGTTCGGGTGCGATATGTAATGTTTCCCTTCCTGCTGGCCTCGAGTCATTGTCTAATAAGTTAAGGTACCTCCATTGGAGTGCATATCCTTTGAAGTCACTACCAACAACTTTTTCTCCTGAGAAACTTGTTGAGCTTTACATGCCAAACAGTAATGTTCAAAGATTATGGCACGGAGTGCAGGATCTTACTAATTTAAAGAAAATGGACCTAGCTGTTGTGAGCAATTGA 1629 0.3683 MQIVVPVFYKVDPSHVRKQSGSYKIAFEEHLCNLKHFNKVNDWRLALTQATSLAGWDSCKYMLESELVEDIVQDILRKLQHKYPIESKGLVGIDKHYARLESFLTIGSREVGMIGIWGMGGIGKTTIAAAIFDHFSSQFEGCCFLENVGDESDINGLSFLHNKLLTMLLEEKENLHIGTMRSSSNFSKSRLSHKKVLIVLDDLRTQEQLDFLIGTRTCLGPGSRVIVTTRDKHVLISRAHEIYEVKPLNFDESLQLFSLSAFNKVHPDVGYRQVSENVVINYAGGIPLALKVLGSLFCSKSKEIWQSTMTKLNKIPCKEIQNILKLSYDGLDDTEKEIFLDIACFLNGKDKQHVTRFLDACGFYAVPGLETLLEKALISISNNNQVQMHALIQEMGREIVRQESTKHPGRHSRLYDHQEVYDVLNNNMGTDTIEGISLDVSQIRGMNLSSDIFVKMINLRFLKFYSRSGAICNVSLPAGLESLSNKLRYLHWSAYPLKSLPTTFSPEKLVELYMPNSNVQRLWHGVQDLTNLKKMDLAVVSN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00087 542 Gene3D - 1 76 IPR035897 -
Tsu08g00087 542 Gene3D - 77 245 IPR027417 -
Tsu08g00087 542 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 56 IPR035897 -
Tsu08g00087 542 Pfam NB-ARC domain 96 329 IPR002182 GO:0043531
Tsu08g00087 542 Pfam Leucine Rich Repeat 508 527 IPR011713 -
Tsu08g00087 542 SUPERFAMILY L domain-like 437 537 - -
Tsu08g00087 542 SUPERFAMILY "Winged helix" DNA-binding domain 318 424 IPR036390 -
Tsu08g00087 542 Gene3D - 248 332 IPR042197 -
Tsu08g00087 542 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 532 - -
Tsu08g00087 542 Pfam TIR domain 2 90 IPR000157 GO:0007165
Tsu08g00087 542 ProSiteProfiles TIR domain profile. 1 79 IPR000157 GO:0007165
Tsu08g00087 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 342 IPR027417 -
Tsu08g00087 542 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 532 IPR044974 GO:0006952
Tsu08g00087 542 Gene3D Ribonuclease Inhibitor 418 541 IPR032675 -
Tsu08g00087 542 PRINTS Disease resistance protein signature 113 128 - -
Tsu08g00087 542 PRINTS Disease resistance protein signature 527 542 - -
Tsu08g00087 542 PRINTS Disease resistance protein signature 190 204 - -
Tsu08g00087 542 PRINTS Disease resistance protein signature 283 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00087 Tsu-Chr8 799012 801762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00087 2 538 WRKY Transcription Factor Family AT4G12020 37.297 7.16e-100 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00087 - - mtr:MTR_4g043630 919.072