Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00086 ATGACATACTTGGATTTAAGATGTACCGCTATTAATGAATTGCCGGTATCAGTTAAGTACCTAAGCAGTCTTATGAACTTGGAGCTGAGTAGCTGTGGACACCTTAGAAATCTTCCAAATGAGTTCTCATGCCTGAAATCTCTTGGCCGGCTAGTACTTTCCGATTGCACGCTACTTGACACATCTAATTTACATCTTCTATTCGATGGCCTACGTTCTTTAGGATACCTGTGTTTTGACAACTGTTGTAACCTAATCGAACTCCCTAGCAATATTAGTTTGTTATCATCATTGTATTATTTATCACTAAGTGGAAGCAATGTGAAGAACATTCCTGAAAGCATCAAACATCTCTCACAGCTAGAATCTCTTGACTTGTGCAAATGCTTGAACATTCAGTCTTTACCAGAACTCCCACCATCCATCGAAGCATTGGATGTCACCAACTGCACGTCCTTGGAAACGGTCTTCACGTCTCCTGTTATTGATGAACTACTACAAGAGCATAAGGTATTCATTTCCTTCAAAAATTGTGTGAAATTGAGTGAACAATCCCGCGATATTCTTATGTTAGAATCTCAAGTTAGACTAAAGGAAGCAGCATATGTTCATGTATcagcaaaaatagaaagaagcGACGGTGACTCTTCTTACTTTTTTAAATCAGATGTAGCGTCGTCTTATCAATGTCATCATCCGCCAACAGTTATTTTCCCAGGAAGTAAAGTTCCAGACTGGTTTCCTTATCGGTCAACTAAATCGTCGATAACCATTGAACTTTCACTTTCAGATTCTCCACAATCTAACATATGTGGTTTCATTTTCTGCCTCATTCTTCCACCATccacaacaaatgaaaataatagCAATTGGAAAATTGGATGTGAGTGCTATCTTGAAAGTGGTGAAAACATTAGAAACACGAGTATGTGCTCTTTTGCTACAGGATTGATTTCAGATCATGTGTACCTATGGTATGATGAAAATTTCTGTCTTGACATGCTTAACACAACCGGTAAAGGTAGAACAAGTGGTCACTACAACACTTATAAGCCAAAGCTTTCGTTTCAGTTCTTCGTTGAAACTGAGGATAAGTTGAATGAGTTGGAGTTGGGAAAccaagcaaaaagaaaaagggataTTTATGAGCATGAAGATGAACAAGAtacatttcatcaaacaaagaaacatgGTTGA 1197 0.3559 MTYLDLRCTAINELPVSVKYLSSLMNLELSSCGHLRNLPNEFSCLKSLGRLVLSDCTLLDTSNLHLLFDGLRSLGYLCFDNCCNLIELPSNISLLSSLYYLSLSGSNVKNIPESIKHLSQLESLDLCKCLNIQSLPELPPSIEALDVTNCTSLETVFTSPVIDELLQEHKVFISFKNCVKLSEQSRDILMLESQVRLKEAAYVHVSAKIERSDGDSSYFFKSDVASSYQCHHPPTVIFPGSKVPDWFPYRSTKSSITIELSLSDSPQSNICGFIFCLILPPSTTNENNSNWKIGCECYLESGENIRNTSMCSFATGLISDHVYLWYDENFCLDMLNTTGKGRTSGHYNTYKPKLSFQFFVETEDKLNELELGNQAKRKRDIYEHEDEQDTFHQTKKHG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00086 398 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 320 IPR044974 GO:0006952
Tsu08g00086 398 SUPERFAMILY RNI-like 2 155 - -
Tsu08g00086 398 Pfam C-JID domain 238 358 IPR045344 -
Tsu08g00086 398 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 320 - -
Tsu08g00086 398 Gene3D Ribonuclease Inhibitor 1 198 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00086 Tsu-Chr8 796905 798775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00086 4 333 WRKY Transcription Factor Family AT5G45050 24.000 3.25e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00086 - - mtr:MTR_4g043630 624.78