Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00066 ATGAACACTCATGTTTGGAACGGCAATGTGAACGGCTATGATCAGTTTGAACCTTCCACAATGACGCCATTTCAAGACCCTTTGGCTCCGGCAGCAGAGGCGTTGCCTATTTCCCGGAGTCCGAGTTTCCGGAGCATTGTCTTGGCTGAGAATTGGGCAGAGCTTCCGTTGAAGGAGGATGATACCGATGACATGGTAATCTACGGGGCATTGCAAGAAGCTGCAACTACCACTGGCTGGTTCCCCAGTAGTAACAACGGGGTAAACAATGTCGATGTAGCCATGAAAATAGAAGATCAAGGTCAAAGCAGTGGCACTTCGGAGGCGCATGAGCCAACGAGTAGTAAAAGTCTAGGCTACCGTGGGGTGAGAAGGAGGCCTTGGGGGAAATATGCTGCCGAGATAAGGGATTCTAAGAGAAATGGCGCGAGGGTGTGGCTTGGGACTTATGAAACAGCTGAGAATGCAGCTTTGGCTTATGATCGAGCTGCGTTTAAATTACGCGGCTCGAAAGCCAAACTGAATTTTCCTCATTTGATCGATTCAGATTACACCGAATTGGTTAATAAAATCACACGGAAATAG 585 0.4821 MNTHVWNGNVNGYDQFEPSTMTPFQDPLAPAAEALPISRSPSFRSIVLAENWAELPLKEDDTDDMVIYGALQEAATTTGWFPSSNNGVNNVDVAMKIEDQGQSSGTSEAHEPTSSKSLGYRGVRRRPWGKYAAEIRDSKRNGARVWLGTYETAENAALAYDRAAFKLRGSKAKLNFPHLIDSDYTELVNKITRK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00066 194 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Tsu08g00066 194 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Tsu08g00066 194 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Tsu08g00066 194 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Tsu08g00066 194 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Tsu08g00066 194 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Tsu08g00066 194 MobiDBLite consensus disorder prediction 100 121 - -
Tsu08g00066 194 PANTHER BNAC04G53270D PROTEIN 25 186 - -
Tsu08g00066 194 MobiDBLite consensus disorder prediction 100 114 - -
Tsu08g00066 194 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Tsu08g00066 194 Gene3D AP2/ERF domain 119 178 IPR036955 GO:0003700|GO:0006355
Tsu08g00066 194 PANTHER DNA-BINDING DOMAIN 25 186 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00066 Tsu-Chr8 584148 584732 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00066 39 194 AP2-EREBP Transcription Factor Family AT2G44840 54.487 3.26e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu08g00066 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00066 K09286 - gmx:100793366 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00066 08 584148 584732 Tsu08g00066 08 584148 584732 ECH