Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00064 ATGGGTGCTGCTAATTCCAACCATCAAATATCCAATTCATCCTTGTACGGTTCATTTCCCAGTCCCATGTTACTATATTCTAATGCCAATGATGACACGTCTAAATTCGGATCATCAACAACTTCTTGTAAACCTCTTGTGCCAGTACCGGAATGGAAGCGGTTTAGAGGCGTGAGGCGAAGACCATGGGGAAAATTTGCCGCCGAGATAAGGGATGCAAAGAAAAATGGATCTAGAGTTTGGCTTGGAACTTACAAAACCGAAGAAGAAGCTGGTTTGGCTTACGATAGAGCCGCTTTTAAGATGCGTGGTAGAAAAGCCAAGCTAAATTTTCCCCACCTCATCCGCTCTGATTTGCCAGTGGAGCCAATGATAGTGGTGGAAGCTTCTGAGAAGAGCCCATGTGAAGCTAATAATTCGGATTCCTCCAGAGGGATAATAAAGAAGAGGAAGAACTTAGTTGATGTATTGAATAGGTTAGCTAATAGTAAAAGACAATTAAGTGAAGGATTTGAAATGAGTTTAGGGGTTGATGATGTTCATGTTCATCAATGGCTGAATAATTCTGTGCTCTAA 576 0.4167 MGAANSNHQISNSSLYGSFPSPMLLYSNANDDTSKFGSSTTSCKPLVPVPEWKRFRGVRRRPWGKFAAEIRDAKKNGSRVWLGTYKTEEEAGLAYDRAAFKMRGRKAKLNFPHLIRSDLPVEPMIVVEASEKSPCEANNSDSSRGIIKKRKNLVDVLNRLANSKRQLSEGFEMSLGVDDVHVHQWLNNSVL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00064 191 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Tsu08g00064 191 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Tsu08g00064 191 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Tsu08g00064 191 CDD AP2 53 114 IPR001471 GO:0003700|GO:0006355
Tsu08g00064 191 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Tsu08g00064 191 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 39 164 - -
Tsu08g00064 191 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tsu08g00064 191 PRINTS Ethylene responsive element binding protein signature 94 114 IPR001471 GO:0003700|GO:0006355
Tsu08g00064 191 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Tsu08g00064 191 PANTHER DNA-BINDING DOMAIN 39 164 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00064 Tsu-Chr8 562741 563316 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00064 54 117 AP2-EREBP Transcription Factor Family AT2G44840 79.688 3.15e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g00064 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00064 K09286 - gmx:100527194 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00064 08 562741 563316 Tsu08g00064 08 562741 563316 ECH
Tsu08g00064 08 562741 563316 Tsu04g01875 04 20115668 20116291 PCT