Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00062 ATGGATGCTGCTAATTCCAACCATCCCTTGTACGGTGCACTTCCTAGTCCTACGTTATTAGATTCTAATGTCAAAGAAGACACGTGTAAAATCGGAAAACCTTGTGTGCCAGTACCAGAATGGAAGCGGTATAGAGGTGTGAGGCGAAGGCCATGGGGGAAATTTGCAGCAGAGATAAGGGATCCAAAGAAGAATGGAGCTAGAGTTTGGCTTGGAACTTACAAAACTGAAGAAGAAGCTGGTTTGGCTTACGATAGAGCCGCTTTCAAGATACGTGGTAGAAAAGCCAAGCTCAATTTTCCCCATCTGATCGGGTCTGATTTGCCGATGCAACCGATGATAGTGGTGGATGCTTCGGAGAAGAGCCCGCACGAAGCTAATTCGGAGTCCTCGGGAGGGAtaataaagaagagaaaaaactTAGTTGATGTATTGAATAGGTTAGCTACTAATAGTAAAAGACAATTAAGTGGAGGATTTGAAATGGGTTTAGGGGTTGATGATGTTCATTTTCATCAATGGCTAAATGGTCCTGTGCTGTAA 543 0.4273 MDAANSNHPLYGALPSPTLLDSNVKEDTCKIGKPCVPVPEWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYKTEEEAGLAYDRAAFKIRGRKAKLNFPHLIGSDLPMQPMIVVDASEKSPHEANSESSGGIIKKRKNLVDVLNRLATNSKRQLSGGFEMGLGVDDVHFHQWLNGPVL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00062 180 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Tsu08g00062 180 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Tsu08g00062 180 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Tsu08g00062 180 PANTHER DNA-BINDING DOMAIN 33 152 IPR044808 GO:0003700|GO:0009873
Tsu08g00062 180 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Tsu08g00062 180 SMART rav1_2 43 107 IPR001471 GO:0003700|GO:0006355
Tsu08g00062 180 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Tsu08g00062 180 CDD AP2 42 103 IPR001471 GO:0003700|GO:0006355
Tsu08g00062 180 ProSiteProfiles AP2/ERF domain profile. 43 101 IPR001471 GO:0003700|GO:0006355
Tsu08g00062 180 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 33 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00062 Tsu-Chr8 538495 539037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00062 43 106 AP2-EREBP Transcription Factor Family AT2G44840 85.938 5.41e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g00062 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00062 K09286 K13432 gmx:100805648 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00062 08 538495 539037 Tsu08g00062 08 538495 539037 ECH
Tsu08g00062 08 538495 539037 Tsu04g01872 04 20094033 20094693 PCT