Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00060 ATGGTGGAGGAGACCATGCGGGTGGAAGGGACCTTGTCTCTTGATGCTGTTATAAAGGAAGCTGTTGATCTGGAGAACATTCCTATTGAGGAGGTCTTTGATAATCTCAAATGCACAAAAGAAGGTTTAAGCTCTGAACAAGTACAAAATAGGCTTGATATGTTTGGATACAATAAACTTGAAGAAAAGAAGGAAAGTAAAATACTAAAGTTTTTAGGGTTTATGTGGAATCCTTTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCTATGGCTCATGGAGGGAGAAATCATGATGGAACGGAGAAACGTGGAGATTATCAAGATTTTGTTGGCATAATTATTTTGCTAATTATAAACTCTACGATAAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCTGCTGCCCTTATGGCAAGATTGGCTCCAAAAGCaaagGTACTTCGTGATGGAAAATGGAGCGAAGAAGACGCTTCAGTGTTGGTCCCTGGAGACATAGTTAGTATCAAGTTAGGTGACATTGTTCCGGCCGATGCACGTCTCCTTGAAGGAGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTGACAAAACATCCTGGAGAAGGAGTATATTCTGGTTCAACCTGCAAGCAAGGAGAAATCGAGGCCATAGTCATTGCAACTGGAGTTCACACATTTTTTGGGAAAGCAGCTCATCTTGTCGAAAACACAACTCATGTTGGACATTTCCAGAAGGTTCTGACATCTATTGGGAATTTCTGTATCTGTTCAATTGCTATTGGAATGATTATTGAAATCATTGTGATATATGGCATCAACAGATATGGATACAGAACTGGTATTGATAACCTTCTCGTGCTACTAATCGGTGGGATCCCTATTGCAATGCCAACTGTTCTTTCAGTTACAATGGCTATTGGTTCACATAAATTGTCTCAGCAGGGTGCAATAACAAAGAGAATGACTGCTATTGAAGAAATGGCTGGCATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTACAGTGGATAGGGAGATGATTGAGGTTTTTGCTAAAGGTGTTGACAAGGATTTGGTTGTACTTATGGCTGCAAGAGCATCGAGGATGGAGAACCAGGATGCAATTGATTGTGCAATCGTTTCAATGTTGGCGGACCCAAAAGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTTAATCCAACTGATAAAAGAACTGCACTTACATACATCGATGCTGCTGGTACCATGCACAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCACATAATAAGGCAGAAATTAGCCACAAGGTTCATGCAATGATTGACAGGTTTGCAGAACGCGGACTTCGTTCTCTTGGGGTTGCCAGACAGGTAGTACCTGAGGGAACTAAGGACAGTCCAGGAGGACCATGGGAGTTTGTTGCCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATTAGAAGAGCTCTTGATCTTGGTGTTAGTGTCAAAATGATCACCGgCGATCAACTTGCAATAGGAAAGGAAACAGGAAGGCGTCTAGGGATGGGGACTAACATGTATCCTTCGTCGTCACTGCTTGGCGAAAATAAAGATCAATTAGGTTCTGTCTCCATTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGAACACAAGTATGAGATTGTGAAGAGATTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAATGATGCACCTGCCTTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCTCGAAGTGCTTCTGACATAGTGCTGACAGAACCTGGTTTGAGTGTCATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTATACAATATATGCTGTATCTATCACTATTCGTATTGTGCTGGGTTTCATGTTACTTAATGCCTTTTGGAGTTTTGACTTTCCACCCTTTATGGTTCTTATCATTGCCATTCTCAATGATGgTACCATCATGACAATATCTAAAGATAGGGTTAAGCCATCTCCACTTCCAGATAGTTGGAAGCTTAGCGAAATTTTTGCAACTGGAGTGATTCTTGGTACCTATCTGGCTCTAATGACAGTGATCTTCTTCTATGTAATGTTTGAAACAAACTTTTTTCCTAACCATTTTCATGTGAAACAAATCCGCCCCAATCTTCATGCTCCTGTCACTGATGAAATGAAAGCGATGTTTGCTTCTGCTGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTAATCTTTGTGACACGGTCCAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTTTTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGCTATATCAGCATTTGCTAATTGGGAAATTGCTGGAATCAGAGCCATAGGTATGGGCTGGGCAGGAGTCATTTGGTTGTTCAACATTGTAACTTATGTTTTTCTTGATCCTTTAAAGTTTGCTGTTGCTTATCAACAAAGCGGAAGGGCTTGGAATCTGGTGGTAAACCAAAGAACTGCATTCACCAACAAAAATGATTTTGGTAAAGAATCTCGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCATGGCCTTCGCTCTTTTGAGTCAAAAGGGTTTGCAGAGAAGCACAACAACcataaagaaataaatacaaTGGCAGACGAGGCTAAGAGACGAGCAGAGTTAGCAAGGTTGAGAGAGCTTCACACACTGAAAGGAAGAGTGGAATCGTTTGCCAGGCTAAGGGGTTTGGACGTTGAGACCATGAATGGGCACTACACTGTCTAA 2922 0.4172 MVEETMRVEGTLSLDAVIKEAVDLENIPIEEVFDNLKCTKEGLSSEQVQNRLDMFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGRNHDGTEKRGDYQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIVSIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKHPGEGVYSGSTCKQGEIEAIVIATGVHTFFGKAAHLVENTTHVGHFQKVLTSIGNFCICSIAIGMIIEIIVIYGINRYGYRTGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDREMIEVFAKGVDKDLVVLMAARASRMENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGTMHRVSKGAPEQILNLAHNKAEISHKVHAMIDRFAERGLRSLGVARQVVPEGTKDSPGGPWEFVALLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDQLGSVSIDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNAFWSFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVILGTYLALMTVIFFYVMFETNFFPNHFHVKQIRPNLHAPVTDEMKAMFASAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVFAFVIAQLVATAISAFANWEIAGIRAIGMGWAGVIWLFNIVTYVFLDPLKFAVAYQQSGRAWNLVVNQRTAFTNKNDFGKESREAAWAAEQRTLHGLRSFESKGFAEKHNNHKEINTMADEAKRRAELARLRELHTLKGRVESFARLRGLDVETMNGHYTV 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00060 973 Pfam E1-E2 ATPase 144 322 - -
Tsu08g00060 973 Gene3D - 922 973 - -
Tsu08g00060 973 SUPERFAMILY HAD-like 339 648 IPR036412 -
Tsu08g00060 973 SFLD Haloacid Dehalogenase 325 652 - -
Tsu08g00060 973 PRINTS P-type cation-transporting ATPase superfamily signature 497 508 - -
Tsu08g00060 973 PRINTS P-type cation-transporting ATPase superfamily signature 343 357 - -
Tsu08g00060 973 PRINTS P-type cation-transporting ATPase superfamily signature 193 207 - -
Tsu08g00060 973 PRINTS P-type cation-transporting ATPase superfamily signature 624 636 - -
Tsu08g00060 973 PRINTS P-type cation-transporting ATPase superfamily signature 519 529 - -
Tsu08g00060 973 PRINTS P-type cation-transporting ATPase superfamily signature 601 620 - -
Tsu08g00060 973 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 42 828 IPR006534 GO:0008553|GO:0016021|GO:0120029
Tsu08g00060 973 SUPERFAMILY Calcium ATPase, transduction domain A 146 243 IPR008250 -
Tsu08g00060 973 SUPERFAMILY Calcium ATPase, transmembrane domain M 23 865 IPR023298 -
Tsu08g00060 973 CDD P-type_ATPase_H 42 863 IPR006534 GO:0008553|GO:0016021|GO:0120029
Tsu08g00060 973 Gene3D - 146 230 - -
Tsu08g00060 973 Pfam haloacid dehalogenase-like hydrolase 339 615 - -
Tsu08g00060 973 Pfam Cation transporter/ATPase, N-terminus 26 89 IPR004014 -
Tsu08g00060 973 SFLD p-type atpase 325 652 IPR044492 -
Tsu08g00060 973 PRINTS H+-transporting ATPase (proton pump) signature 632 657 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 PRINTS H+-transporting ATPase (proton pump) signature 601 617 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 PRINTS H+-transporting ATPase (proton pump) signature 573 589 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 PRINTS H+-transporting ATPase (proton pump) signature 782 803 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 PRINTS H+-transporting ATPase (proton pump) signature 459 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 PANTHER CALCIUM-TRANSPORTING ATPASE 9 953 - -
Tsu08g00060 973 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 115 550 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 576 680 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00060 973 ProSitePatterns E1-E2 ATPases phosphorylation site. 345 351 IPR018303 -
Tsu08g00060 973 Gene3D - 355 502 IPR023299 GO:0000166
Tsu08g00060 973 Gene3D - 108 837 - -
Tsu08g00060 973 Gene3D - 340 638 IPR023214 -
Tsu08g00060 973 PANTHER PLASMA MEMBRANE ATPASE 9 953 - -
Tsu08g00060 973 SMART Cation_ATPase_N_a_2 23 95 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00060 Tsu-Chr8 513002 519704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00060 14 973 Primary Pumps ATPases AT5G62670 78.564 0.0 1508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00060 K01535 - gmx:100794938 1612.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00060 08 513002 519704 Tsu08g00060 08 513002 519704 ECH