Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00052 ATGGCTGCAGCTTTGGTGGCAGGTGCATTTCTGTCTGCAACTATTCAGACCATAGCAGAAAAGCTAAGCTCAACGGAATTTCGTGGTTTCATCAGCAACACTAAGTTCAATTACTCACTACTCGCAGAGTTGAAAACAACACTGTTTTCTCTACAAGCTGTGCTGGTAGATGCAGAACAGAAACAGTTCAATGATCTTCCTGTCAAACAATGGCTTGATGACTTGAAAGACGCAATTTTTTATTCTGAAGATTTGCTCAACTTAATCAGTTACGATGCCTTGCGGTGCAAGGTGGAGAACACACCAACTGATCAGCTGCAGAATTTGTCTTCATCTATGAAGATCAATTCCAAGATGGAGAAGATGTGTAAAAGGCTGCAAACTTTTGTCCAGCAGAAAGACATCCTTGGCTTGCAAAGAACTGTAAGTGGTAGAGTTCGTAGAACACCTTCAAGTTCAGTGGTAAATGAATCTATCACGGTTGGTAGGAATGATGATAAAGATAGACTAATCGATGTTTTGGTATCAGACTGTGGATCCTGCAGAAATAATAATTTCGGTGTTGTTGCAATTCTGGGTATGGGAGGTGTCGGTAAAACGACCCTTGCACAACTAGTTTACAATGACGAAAACGTTGAAAAACATTTTGATCTCAAAGCGTGGGTTTATGTATCGGAGGATTTTGATATTGTGAGGGCAACCAAGTCTCTCCTTGAATCTGTTGTTAGAAATACAACATCTACTTCTTCAAAGGTTTGGGAAAGCGATAATCTTGATATTCTCCGAGTTGAATTAATGAAACAGTTGATCGATAGaaaatttttgtttgtgttggaTGACTTATGGAATGACAATTACATTGACTGGAATGAGCTAGTAACTCCCATGTTTAAGGGGAAAACCGGAAGCAAGGTGATCATAACAACACGCGAACAAAAAGTTGCAGAGATCGCACGCACATTTCCAATTCATAAATTGGAACCTTTATCTGATGAAGATTGTTGGTCTTTGCTGTCAATGCATGCAATTGGAGGTGAATACCTTGGTCGTGGTAAATATCCAAAGCTAGAAGCAATTGGTAGGAAGATTTCTCGAAAGTGTAATGGATTGCCGATAGCTGCCAAAGCACTCAGTGGACTAATGCGTTTGAAGGTCGATGAAAAGGAGTGGAATGCAATTCTGAATAGCGATATATGGAAAttacaaaatgataaaattctCCCCGCTTTGCATTTGAGTTATCAATATCTTCCATCTCATTTGAAGGTATGTTTTGCCTATTGTTCAATTTTCTCAAAAGATTACTCACTTGATCGGAAGAAATTGGTTTTGTTATGGATGGCAGAAGGCTTCCTTGATTATTCTCATAGCGGAAAATCGATAGAGGAAGTGGGTGATGATTGTTTTTCTGAATTGTTATCCAGATCCTTAATTCAACAATCAAATGATGATTCTCAcgaaaaaaaagtttttcatGCATGA 1482 0.3785 MAAALVAGAFLSATIQTIAEKLSSTEFRGFISNTKFNYSLLAELKTTLFSLQAVLVDAEQKQFNDLPVKQWLDDLKDAIFYSEDLLNLISYDALRCKVENTPTDQLQNLSSSMKINSKMEKMCKRLQTFVQQKDILGLQRTVSGRVRRTPSSSVVNESITVGRNDDKDRLIDVLVSDCGSCRNNNFGVVAILGMGGVGKTTLAQLVYNDENVEKHFDLKAWVYVSEDFDIVRATKSLLESVVRNTTSTSSKVWESDNLDILRVELMKQLIDRKFLFVLDDLWNDNYIDWNELVTPMFKGKTGSKVIITTREQKVAEIARTFPIHKLEPLSDEDCWSLLSMHAIGGEYLGRGKYPKLEAIGRKISRKCNGLPIAAKALSGLMRLKVDEKEWNAILNSDIWKLQNDKILPALHLSYQYLPSHLKVCFAYCSIFSKDYSLDRKKLVLLWMAEGFLDYSHSGKSIEEVGDDCFSELLSRSLIQQSNDDSHEKKVFHA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00052 493 Pfam NB-ARC domain 166 396 IPR002182 GO:0043531
Tsu08g00052 493 Gene3D - 413 492 IPR036388 -
Tsu08g00052 493 PANTHER - 76 485 - -
Tsu08g00052 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 428 IPR027417 -
Tsu08g00052 493 Coils Coil 41 61 - -
Tsu08g00052 493 Gene3D - 17 135 - -
Tsu08g00052 493 PANTHER DISEASE RESISTANCE PROTEIN RP 76 485 IPR044974 GO:0006952
Tsu08g00052 493 PRINTS Disease resistance protein signature 188 203 - -
Tsu08g00052 493 PRINTS Disease resistance protein signature 268 282 - -
Tsu08g00052 493 PRINTS Disease resistance protein signature 367 381 - -
Tsu08g00052 493 Gene3D - 328 412 IPR042197 -
Tsu08g00052 493 Pfam Rx N-terminal domain 10 100 IPR041118 -
Tsu08g00052 493 Gene3D - 145 321 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00052 Tsu-Chr8 451386 452971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00052 189 373 WRKY Transcription Factor Family AT5G45050 26.804 4.96e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00052 - - mtr:MTR_3g033080 766.533