Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00043 atgggTGAGAAAGATGATGATTTTAGTTTGGGTTTAGGTTTGAGTTTAAGTTTAGGATGTGGTgattatgcaaaaaatattagtaataatCAAATTCCATTGAAGGTGAATCACATGCAAAAGCCTCCTCAATCAGTTCCAAACCACCAAAGGGTTTCATTCAACAACTTGTTCCATTTTCATGATCTGAGTACCGAAACGAGGTCGTTTCTCCGCGGAATAGACGCAAACTCGCCGCATCCATCAGCTCCGGCGGCGGCGTTCGAAGATGAGAACGGAGTTTCTTCACCAAACAGCACCGTATCAAGCATCAGCGGAAAGAGAAGCGAAAGAGAAGGTAATGGAGACGAAAACGACGCTGTTGAGAGAGCTTCATGTTCACGCGGTGGTGgaagtgatgatgatgacggCGGAGGTTGCGGCGGCGACGGTGATTCTTCAAGGAAGAAGCTGAGGTTGTCGAAGGAACAGTCAATGTTGCTTGAAGAAACTTTCAAGGAGCATAATACACTGAATCCGAAACAAAAGCAAGCATTGGCTAAGCAATTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGCGAATATTTGAAGAGATGCTGCGAGACTCTAACTGAAGAAAATCGAAGATTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGCGAGCGTGTCGCCGTATCATCTGCATCCTCCTCGTCAGCAGCCGCACCCTCTGTTCCAGCTCCAGCTAACTGCAACCCACCAGGCTCAAGTGTTCAGCGGCCAATACCTCTCAACCCTTGGGCGGCAATGTCTAATCAAAACCGTTCTCGCCCATGA 933 0.4491 MGEKDDDFSLGLGLSLSLGCGDYAKNISNNQIPLKVNHMQKPPQSVPNHQRVSFNNLFHFHDLSTETRSFLRGIDANSPHPSAPAAAFEDENGVSSPNSTVSSISGKRSEREGNGDENDAVERASCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSVPAPANCNPPGSSVQRPIPLNPWAAMSNQNRSRP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00043 310 Coils Coil 210 240 - -
Tsu08g00043 310 SUPERFAMILY Homeodomain-like 133 205 IPR009057 -
Tsu08g00043 310 MobiDBLite consensus disorder prediction 109 123 - -
Tsu08g00043 310 Gene3D - 140 209 - -
Tsu08g00043 310 Pfam Homeobox associated leucine zipper 204 238 IPR003106 GO:0006355|GO:0043565
Tsu08g00043 310 MobiDBLite consensus disorder prediction 92 108 - -
Tsu08g00043 310 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677
Tsu08g00043 310 Pfam HD-ZIP protein N terminus 1 112 IPR006712 GO:0005634
Tsu08g00043 310 Pfam Homeodomain 148 202 IPR001356 GO:0003677
Tsu08g00043 310 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Tsu08g00043 310 PANTHER - 9 304 - -
Tsu08g00043 310 SMART halz 204 247 IPR003106 GO:0006355|GO:0043565
Tsu08g00043 310 MobiDBLite consensus disorder prediction 73 150 - -
Tsu08g00043 310 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981|GO:0006355
Tsu08g00043 310 CDD homeodomain 148 205 IPR001356 GO:0003677
Tsu08g00043 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 304 - -
Tsu08g00043 310 MobiDBLite consensus disorder prediction 267 310 - -
Tsu08g00043 310 MobiDBLite consensus disorder prediction 267 290 - -
Tsu08g00043 310 SMART HOX_1 146 208 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00043 Tsu-Chr8 419247 422490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00043 38 302 Homeobox Transcription Factor Family AT3G60390 64.516 6.40e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g00043 HD-ZIP_N 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00043 K09338 - gmx:100798480 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00043 08 419247 422490 Tsu08g00043 08 419247 422490 ECH