Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00042 ATGTCACAAGCTCAAAAAGCACTCACTGATTACCTTCATTCCACAAGGTCCATCCCTTATGCTTTTGCAGATAAAATTTCCGAAAACtctcttcattctctctccAATCTCATTTCAAAGTTGGGTTCTTTTTCACCTTCTGATTTCACCAAGAAGCTTGATAAGTACTTAAGGTATAACCCAATTAAtgaatttgagtttttctttGAAAGTATTGGAATTCAATATACTCATGTTTCATCTTTATTGCCTCATgataagtttttcttttgtgaAGATGGGTCACTTCTTGATTCTGCTTGTGTACTTTATGAATTTGGGTTTCCTTGGGATAAGATTGGTTTAATTTATATGGAGAGTGGTTTTATGTTTAGGAAAAGTGGTTTTGAATTAAAAGGTAGGCTTAGTTTGTTGAAAAGATATGGTTTTTGTAATGTTCAAATTGTTGGGATATGTTTGacttttccttttgtttttggtgTTGAGGAAGGGAAATTTGTTGATGAGATTGATGGGTTGCTTTCTGATTTGAGGGTTgtgttttttgattttgatttgggaGGGTGTGTTGATGGGAATGTGGATGTTTGGCATGAGATTTGTAGGAAAATTGAAGTGTTTTATGATTTGAATGATGGTAAGTGGAGGATAGGGGAACTCGTCGGAAGGAATAAACATGTGATTCTTGAATATGGAGAAAAAGAGTTGATTGAAAAGGTTGAGTATTTTTGTAGATTTGGTGTCGAGAAGGTGGAAGTAGCTCGGTTGATTCTACAAGGATCGGAAATGTTGAATCTTGATTTGGAAACGCCGGTGATAAATGTGTTGAAGCTGTTGAAACACATTGGAATGAACTCGAAAGATCTTGCTGATGTAAGGAAGAACTACGCTCATGTGTTGGGAACAATAAAAATGGCTAATCTTCCCAATGTGATGAGAGCCATGGGTTTACGTGAGTGGTTTTTCGATAAAATCAAGGATGGGAATCATAAGCTTTTAGTGAATTTTGTCACGAGCTATCCCAATGAAGAGCGTGATAAAGGTTATCGAGATGGTTTGAAGACAATTCATGATGCAAGAACACCAACTCATAAtatgaataaattgaatttcATGCATAATATTGGCTTTGGTGAAAATGCTATGACCATGGATATCTTAACTCACTTGCATGGAACAAGCGAAGAGTTACAAGAAAGATTTGATTGTCTTCTAGGTTTAGGGATTGAATTCTCAAAGCTGTGTAAGATAATCACAAAGAAACCACAGATTCTAAGCCAAAATCCTGAAACCCTAGAGAAAAAGATTAATTTCCTTTGTCAGGAGATGGGAAAATCGTTAGAACTCTTGGACACTTTTCCGGGATTTATATGTTTTGACTTAGAGAACCGAATTAAGCCGAGGTTCAGATTCTATACGTGGGTTATAGAAAAGGGATTGTCTTCCAAAAAATATTCCATCGCAAGCATGATTGCGACTAGTGACAAGAATTTTGTTGGCCGTGCTTTTACAATTCACCCGGCTGCTCCAAAACATTGCTCTTGGTTAACGCAGCCACTGACTGTGGCAGATGGGTTATTGTTGAAAAGTGAAGGGTGGCTTCCCAAGGTACTCATTGGCAACACCAATGCTCCTTCAAACCCTCAAGTTGAATCATTGAGGAGTTTTGAACCATTTCTATTCCAGCTTCATGTGAAGTGCAATATTGCGAGGAGCCAAGATGAAATATTCTGA 1734 0.3518 MSQAQKALTDYLHSTRSIPYAFADKISENSLHSLSNLISKLGSFSPSDFTKKLDKYLRYNPINEFEFFFESIGIQYTHVSSLLPHDKFFFCEDGSLLDSACVLYEFGFPWDKIGLIYMESGFMFRKSGFELKGRLSLLKRYGFCNVQIVGICLTFPFVFGVEEGKFVDEIDGLLSDLRVVFFDFDLGGCVDGNVDVWHEICRKIEVFYDLNDGKWRIGELVGRNKHVILEYGEKELIEKVEYFCRFGVEKVEVARLILQGSEMLNLDLETPVINVLKLLKHIGMNSKDLADVRKNYAHVLGTIKMANLPNVMRAMGLREWFFDKIKDGNHKLLVNFVTSYPNEERDKGYRDGLKTIHDARTPTHNMNKLNFMHNIGFGENAMTMDILTHLHGTSEELQERFDCLLGLGIEFSKLCKIITKKPQILSQNPETLEKKINFLCQEMGKSLELLDTFPGFICFDLENRIKPRFRFYTWVIEKGLSSKKYSIASMIATSDKNFVGRAFTIHPAAPKHCSWLTQPLTVADGLLLKSEGWLPKVLIGNTNAPSNPQVESLRSFEPFLFQLHVKCNIARSQDEIF 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00042 577 SMART mt_12 415 446 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 SMART mt_12 447 479 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 SMART mt_12 254 285 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 SMART mt_12 219 249 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 2 516 - -
Tsu08g00042 577 PANTHER CGI-12 PROTEIN-RELATED 2 516 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 Pfam mTERF 394 498 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 Pfam mTERF 200 301 IPR003690 GO:0003690|GO:0006355
Tsu08g00042 577 Gene3D Transcription termination factor 3, mitochondrial 31 181 IPR038538 -
Tsu08g00042 577 Gene3D Transcription termination factor 3, mitochondrial 193 508 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00042 Tsu-Chr8 405115 408581 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu08g00042 mTERF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00042 - - gsj:114418754 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00042 08 405115 408581 Tsu08g00042 08 405115 408581 ECH