Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00034 atgcaTGGGAAAAAAGAACAAGAACATGTTAGAAAAGGTCCATGGAAaatagaagaagatgaagtgttaCTTAACCATGTCAAAAAGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAACTTCGACCAAACCTCAAAAATGGGTGCAAGTTTACAACAGAGGAAGAGAGGACTGTGATAGAGTTGCAGGAACAATATGGAAACAAATGGGCTAAGATTGCATCACATTTGCCAGGAAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGCAGACAAAAGAGATTGGCTAGGCTTCtcaaaacatcatcatcagCAACTTCAAAGTCACACAAAAACAAAGCCAAAATTTCTCTCTCTGTCCCAACTTCAGAGATTCCTTGCAAGTTCAGTTCTTCATCGGAGGGAGAAACATCATCAAAGCCTCAATCATGTTCATTACCATGCattgaaaattctgatcaagtTATCAAAATGGTACCATTACTTGATCTTATAAAATCCGAGCCGCCTAATTTCAACACAAACTACATCGAACAAGAGTTCACTCCTTTTGACCAAAGCTACAAAAGCGCTGAACACATTGCATTTCCTCAGATTCCAGAACTCCAAAATGATCTTACTTTTCCAATGCCAAGAGTTGATGACCAaaatttatttgatgtttttggtCCCTTTGATTCATCTGAATTTGGAATGTTTCCTTTTTTTGAACCATCAGGGAGTTGCAGAATTGGGAAAATGGATAGTTTCTTTGATGATTTTCCAGAGGACATGTTTGATAACATTGATCCACCTTTAAGTCCATCTAATAAGCTCTGA 876 0.355 MHGKKEQEHVRKGPWKIEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTTEEERTVIELQEQYGNKWAKIASHLPGRTDNDVKNFWSSRQKRLARLLKTSSSATSKSHKNKAKISLSVPTSEIPCKFSSSSEGETSSKPQSCSLPCIENSDQVIKMVPLLDLIKSEPPNFNTNYIEQEFTPFDQSYKSAEHIAFPQIPELQNDLTFPMPRVDDQNLFDVFGPFDSSEFGMFPFFEPSGSCRIGKMDSFFDDFPEDMFDNIDPPLSPSNKL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00034 291 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Tsu08g00034 291 Pfam Myb-like DNA-binding domain 68 107 IPR001005 -
Tsu08g00034 291 PANTHER TRANSCRIPTION FACTOR DUO1 4 289 - -
Tsu08g00034 291 CDD SANT 68 107 IPR001005 -
Tsu08g00034 291 Pfam Myb-like DNA-binding domain 15 65 - -
Tsu08g00034 291 Gene3D - 3 65 - -
Tsu08g00034 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Tsu08g00034 291 CDD SANT 14 59 IPR001005 -
Tsu08g00034 291 Gene3D - 67 138 - -
Tsu08g00034 291 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Tsu08g00034 291 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Tsu08g00034 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Tsu08g00034 291 SMART sant 11 61 IPR001005 -
Tsu08g00034 291 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00034 Tsu-Chr8 336102 337851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00034 1 287 MYB Transcription Factor Family AT3G60460 53.115 3.58e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g00034 Myb_DNA-bind_6 3.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00034 K09422 - gmx:100818656 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00034 08 336102 337851 Tsu08g00034 08 336102 337851 ECH