Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00025 ATGGAAAAACATCTCAATATCGAAGAAAGTGATGCTTATGAAAATTTTGCTGCAtcctcaacaacatcatcaacttcATCAAATACAGATACATGTACCAAACACGACACAGGAGCCTCTCCAAAGGATTGcaagaagaggaagagaaatAGTGAAAGTGATGAAAATAATAGCAAACATCCAACTTATAGAGGAGTTAGGATGAGGAATTGGGGAAAATTTGTTTGCGAGATTCGCGAGCCGAAGAAAAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAAGGTCATTCAGCATACCTTAATTTTCCTGAATTAGCAAAAGCACTTCCAAAGCCAATAAGTACTTCTCCAAAAGACATTCAAGCTGCAGCTGCAAAAGCAGCTAATAACACTTCATTTGAAGCTCATCAAGTTGAACCAAGACAAGAACATCAACAAGCCTCATCTTCAAGTTCAACATTTACTAATGATGATGCTACATTGTTTGATTTGCCAGATCTTTTTCCTGATGATGGAAACAATGGACTTTGTTCATATTCTTCAAAGAATTCTTCTTGGTATTTATGTTCTGTTGATAGTGGATTTAGGCTTGAGGAACCATCTTTTTGGGAGAAATACTAG 669 0.3468 MEKHLNIEESDAYENFAASSTTSSTSSNTDTCTKHDTGASPKDCKKRKRNSESDENNSKHPTYRGVRMRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAKALPKPISTSPKDIQAAAAKAANNTSFEAHQVEPRQEHQQASSSSSTFTNDDATLFDLPDLFPDDGNNGLCSYSSKNSSWYLCSVDSGFRLEEPSFWEKY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00025 222 MobiDBLite consensus disorder prediction 36 62 - -
Tsu08g00025 222 PANTHER ETHYLENE RESPONSE FACTOR 17 222 - -
Tsu08g00025 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 222 - -
Tsu08g00025 222 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Tsu08g00025 222 MobiDBLite consensus disorder prediction 151 172 - -
Tsu08g00025 222 MobiDBLite consensus disorder prediction 13 35 - -
Tsu08g00025 222 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Tsu08g00025 222 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Tsu08g00025 222 MobiDBLite consensus disorder prediction 1 64 - -
Tsu08g00025 222 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Tsu08g00025 222 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Tsu08g00025 222 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Tsu08g00025 222 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Tsu08g00025 222 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00025 Tsu-Chr8 252894 253641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00025 45 218 AP2-EREBP Transcription Factor Family AT2G44940 51.402 2.49e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g00025 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00025 - - mtr:MTR_8g006410 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00025 08 252894 253641 Tsu08g00025 08 252894 253641 ECH