Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00022 ATGGAGTACTACCTACCAATATTTGTTATGTTGTTGATACAGTTTATATTTGCTGGTCAAACTCTTGGCACAAGAATTGCACTTTTGGAGGGTATGAGCCCAAGGGTATTTGTAGTCTACCGTGGTGCTTTTGCAACTATTGTTCTTGCTCCCTTAGCTTATTTTTCAGGgAGAAACTCTGGCTCCTATTCCTTAAATTTAAGGAGTTTTTCCTTAATATTCTTGACTTCACTAATTGGCATTACAATgaatcaaaatttatattttgaggGTCTATATCTTGCTTCTTCTTCAGTTGCAAGTGCCGTTTGCAATCTTCTTCCAGCAGTCACATTTGTAATAGCAGTCTTAGCAGGaatGGAGAAAGTGAATATTAGAAGTTTGAGAACTATAGCCAAAATAGTGGGAACAATTATATGTGTAAGTGGAGCAGTGTCCATAGCATTGTTGAAGGGTCCAAAGCTACTAAATACAGAAAACTTACCTTCGAAATCAATCTTTGGTTTAGCCTCAGAAAGTGATGAGAATTGGTTGCTTGGATGTTTGTCTCTTCTCGGATGCATTGTTGCCTGGTCAATTTTTCTCATTTTGCAGGTTCCAGCTTATGCAAGTCATCCCAATTACTTGTCACTTTCAGCTTGGATGTGTTTTATGGCAACATTACAATCAGCAGCAGTTACACTATGCTTGGAGCCAAACCTTAATGCATGGAAGATTAATTCTCTACTTCAACTTGGTTGCTCTATATATGCAGGAGTTATGGGTTCTGCAGTAACATTCTGTCTCCAAACATGGTGCATTAAAAGGAGAGGACCTCTCTTCTATGCTATGTTTACTCCTGTTTTTACAGTCATTTGTACTGTATTGGCTGCTTTGTTACTTCATGAAGAAATATACATTggaagCTTGATAGGTGCAATTGGAGTGATCATTGGTTTGTATATTGTGCTTTGGGGTAAAGCTGAAGAAGTAGTTGATGTGAAAGAGAAGATAGATCCAAAATCTATGGTTAATGAAACAGAGGAAGCATATTGTAAAACTGATTTAGAAGAACCACTTTTAAATGCTGAATCTACATCACACCATTGa 1089 0.3646 MEYYLPIFVMLLIQFIFAGQTLGTRIALLEGMSPRVFVVYRGAFATIVLAPLAYFSGRNSGSYSLNLRSFSLIFLTSLIGITMNQNLYFEGLYLASSSVASAVCNLLPAVTFVIAVLAGMEKVNIRSLRTIAKIVGTIICVSGAVSIALLKGPKLLNTENLPSKSIFGLASESDENWLLGCLSLLGCIVAWSIFLILQVPAYASHPNYLSLSAWMCFMATLQSAAVTLCLEPNLNAWKINSLLQLGCSIYAGVMGSAVTFCLQTWCIKRRGPLFYAMFTPVFTVICTVLAALLLHEEIYIGSLIGAIGVIIGLYIVLWGKAEEVVDVKEKIDPKSMVNETEEAYCKTDLEEPLLNAESTSHH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00022 362 Pfam EamA-like transporter family 179 317 IPR000620 GO:0016020|GO:0016021
Tsu08g00022 362 Pfam EamA-like transporter family 6 141 IPR000620 GO:0016020|GO:0016021
Tsu08g00022 362 PANTHER WAT1-RELATED PROTEIN 8 336 - -
Tsu08g00022 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 320 - -
Tsu08g00022 362 PANTHER WAT1-RELATED PROTEIN 8 336 IPR030184 GO:0016021|GO:0022857
Tsu08g00022 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00022 Tsu-Chr8 232074 235769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00022 1 362 Nodulin-like Gene Family AT4G30420 51.604 2.84e-128 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00022 - - gmx:100812331 492.656