Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00016 ATGGATATCATTGAGGAATTGATTGCTATGGAAGAGATAGTTGATATCCAGAATTGCAAAATTGAAACTGCAAACATTGATTTTGAAGAAGAGTCTCTTCTCAACTCTCGTTCCTTCCGTTGTTATTACTATCTCCAAACACTGCCGACCGAAGCACCCATGGCTCTCATCCTTCACGCTACCAAGGAAAACAAAAATGCTTACAAGACTCTAATTGCCGCTCAATATGCCGGCGTCCAAGTTCAATTGGTTCCAGATTTTCAGATGGGTGTTTCCAACAAAACTCCTCAATTTCTCAAGATGAACCCTATTggaaagGTTCCTGTATTGGAAACCCCTGATGGTCCTGTCTTTGAGAGCAATGCAATTGCTCGCTATGTTGCTCGATCCGGTGAAAACAATTTGTTTGGATCATCTCCCATTGATCAGGCCCACGTTGATCAGTGGattgatttttcttctttggaGATTGATGCCAATATTATGAAGTTGTACCTTCCAAGACTTGGATTTGCCCCCTACCTTCCTCCAGCAGAGGAGGCTGCACTTGCTGCATTGAAGAGATCATTTGAGGCTTTGAACACTCACCTTGCCCACAATACCTATCTGGTTGGGGATTCTGTTACCCTTGCTGACATCATTACAACGGTCAACTTGTATTTGGGTTTCGCTAAACTCTTGGTCAAGAGTTTCACCTCAGAGTTTCCTCATGTCGAGAGATACTTCTGGACCTTGGTCAACCAGCCAAATTTCAGAAAGATACTAGGCCAGGTTAAGCAAACCGAAGCTATGCCGCCTATCCAATCTGCAAAGAAGCCTGCCCAGCCTAAGGAATCAAAGCCCAAAACCAAAGAAGAACCAAAGAAAGCGGCTAAATCAGAGCCTGAAAAGCCCAAAGAAGAAGCTGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGGTATTGGATGACTGGAAAAGACTCTACTCTAACACTAAGACTAACTTCCGTGAGGTTGCAGTCAAagGATTCTGGGACATGTATGATCCCGAGGGATATTCTCTCTGGTTTTGTGACTACAAATACAATGATGAGAACACTGTTTCTTTCGTGACACTGAACAAGGTTGGAGGATTTCTTCAGAGGATGGATCTTGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAGGTGAAGGGATTGTGGCTTTTCCGTGGTCAAGAGATTCCAAAGTTTGTCATGGATGAATGCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATATCTGATGAAGCTCAGAAAGAGCGTGCCAGTCAGATGATTGAAGATGCTGAACCTTTTGAGGGTGAGGCTCTTTTGGATGCTAAGTGCTTTAAGTGA 1416 0.4322 MDIIEELIAMEEIVDIQNCKIETANIDFEEESLLNSRSFRCYYYLQTLPTEAPMALILHATKENKNAYKTLIAAQYAGVQVQLVPDFQMGVSNKTPQFLKMNPIGKVPVLETPDGPVFESNAIARYVARSGENNLFGSSPIDQAHVDQWIDFSSLEIDANIMKLYLPRLGFAPYLPPAEEAALAALKRSFEALNTHLAHNTYLVGDSVTLADIITTVNLYLGFAKLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAMPPIQSAKKPAQPKESKPKTKEEPKKAAKSEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERASQMIEDAEPFEGEALLDAKCFK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00016 471 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 54 135 IPR004045 -
Tsu08g00016 471 Gene3D Glutaredoxin 54 127 - -
Tsu08g00016 471 SFLD Main (cytGST) 58 242 - -
Tsu08g00016 471 Pfam Elongation factor 1 gamma, conserved domain 310 418 IPR001662 GO:0003746|GO:0006414
Tsu08g00016 471 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 54 471 IPR044628 GO:0004364
Tsu08g00016 471 CDD GST_N_EF1Bgamma 58 130 - -
Tsu08g00016 471 Gene3D - 132 268 - -
Tsu08g00016 471 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 311 471 IPR001662 GO:0003746|GO:0006414
Tsu08g00016 471 SMART EF1G_2 310 418 IPR001662 GO:0003746|GO:0006414
Tsu08g00016 471 MobiDBLite consensus disorder prediction 275 311 - -
Tsu08g00016 471 PANTHER - 54 471 - -
Tsu08g00016 471 SUPERFAMILY GST C-terminal domain-like 126 266 IPR036282 -
Tsu08g00016 471 Pfam Glutathione S-transferase, C-terminal domain 179 249 IPR004046 -
Tsu08g00016 471 Pfam Glutathione S-transferase, N-terminal domain 56 129 IPR004045 -
Tsu08g00016 471 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 311 471 IPR036433 GO:0003746|GO:0006414
Tsu08g00016 471 SFLD Glutathione Transferase (cytosolic) 58 242 IPR040079 -
Tsu08g00016 471 SUPERFAMILY eEF1-gamma domain 311 471 IPR036433 GO:0003746|GO:0006414
Tsu08g00016 471 CDD GST_C_EF1Bgamma_like 142 264 - -
Tsu08g00016 471 MobiDBLite consensus disorder prediction 262 319 - -
Tsu08g00016 471 SUPERFAMILY Thioredoxin-like 49 129 IPR036249 -
Tsu08g00016 471 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 139 267 IPR010987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00016 Tsu-Chr8 169512 174129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00016 54 471 Eukaryotic Initiation Factors Gene Family AT1G57720 74.702 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00016 K03233 - gmx:100787125 668.692