Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00012 ATGGGTTGTATATGCTCCAAAGGCAGCAGCAAATCTACAAATGAATATGTTGCCCAAAACCACACAATACAATTCATTCCAAATAAATCATCAAAGCATTTGGTTCTCAATAACCATGATTCCACTGCGCGCCTCATATCCAACACTTATCGCAATTCCTCCGATGAAGGACACAAACAAAATGTGTTTGGAATAATAGGAGAAGGAGGATCACAAGTAGAAAAAGATGACgatgaagaagaaggtagaAAGAGGATAAGTAGATGTTTGAGTTACGGGGAAAGGGGATCGCTTATTGTTGTTGGTTGGCCTTCTTGGCTCACTTCTGTTGCCCCTGAAGCCATCGCTGGTTGGGTACCTCGCAGACCCGACTCTTTTCACAAATTGGACAAGATTGGTCAAGGAACTTACAGCAGTGTTTACAGAGCTCGCGATCTTGAAACTAACAAAATTGTAGCTTTGAAGAAGGTTAAATTCGCTAATATGGATCCTGAAAGTGTCCGTTTTATGGCAAGAGAAATCGTTCTCCTTAGAAGGCTTGATCATCCAAATGTCATGAAACTTGAAGGAATGATTACTTCAAAGCTTTCTGGTAGCTTGTATCTTATTTTCGAATATATGGAACATGATCTTACTGGCCTTTCAACAATGCCTGGCAACAAGTTTACTCAACCACAGATCAAGTGTTATATGCAACAACTTCTTCGTGGTCTTGAGCATTGTCACAGTCGCGGTGTTATGCATCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGCCGATTTTGGGCTTGCAACTCATTTTCAGCCATATCAAGGACAGCCTTTAACAAGTCGTGTAGTTACCTTGTGGTACCGGCCACCTGAACTTTTGCTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTATGGAGTGCTGGCTGTATTCTGGCAGAACTACTTGCCGGGAAGCCTATAATGCCTGGACGAACTGAGGTGGAGCAACTGCATAAAATCTTCAAGCTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCTACAATTTTTAAACCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCGGCACTGAGCCTCTTGGAGGTCTTACTTGCTATTGAACCAAGCGATCGAGGAACTGCATCTTCAGCACTTCAGAATGAGTTCTTCACATCAATGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGATGCCAGACTTCGAGAAGAGGAAGCTAGAAGACGGCGAACAGCAAATAAAGGACAAGGAAGACAGGAATCAGTTGGAAGGAATTTTAAAGAGTCTAAAGTTGTGCCAGCACCTGATGCTAATGTTAAGCTTCAGGCATCAATAGAGCAGAAGAGACGAGTGATGTGTAATTCAAAATACATCAGTGAGAAGTACAATCCTGAAAAGGAAGGAGGTTGCTTGCCTCTTGAACCTGCAAAGTCAAGAGCACATAATATCTTCTCTCATTCGGGCCAGTCAATGCATCCAAGTGCATATGGATCGTCACGCAATATGAATTTGAAAGAGGAAGTTGTTATTACTGGTCCTGATCGTGTCTTTACATCTAGAAACTCTGAAATGAGAAAACAAAACTCCTACTGGCACGGTAGGGCTGCACAATTATCAAGATTTTCTAATTCACTTGCAGTTCGAGGTGATTCACGGCTTGATATGGGTGGAGACCGTAATTTGAATTCACAGTGGCTAGAAGATCACTTTGATACGAGATCTAATCACTTGCCTGATGGTGAGTCCAATCAATTGCTGGATGGAACCAAACATTCACACAAAAAAGACTTCCATCTATTCGGGAAGGATCGTGCCATGGATCATGCTCCCAAAAATTGCCACATCAACTATTCTGGACCACTATTTCCTCCAGAGGATAATCTTGAAGAGATCCTTAAGGAGCATGAAAGACAAATCCAACAAGCTGTGCGCAAAGCACGCCTAGctaaggaaaataaaaaaggctGA 2070 0.4155 MGCICSKGSSKSTNEYVAQNHTIQFIPNKSSKHLVLNNHDSTARLISNTYRNSSDEGHKQNVFGIIGEGGSQVEKDDDEEEGRKRISRCLSYGERGSLIVVGWPSWLTSVAPEAIAGWVPRRPDSFHKLDKIGQGTYSSVYRARDLETNKIVALKKVKFANMDPESVRFMAREIVLLRRLDHPNVMKLEGMITSKLSGSLYLIFEYMEHDLTGLSTMPGNKFTQPQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIADFGLATHFQPYQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPSDRGTASSALQNEFFTSMPLPCDPSTLPKYPPSKEFDARLREEEARRRRTANKGQGRQESVGRNFKESKVVPAPDANVKLQASIEQKRRVMCNSKYISEKYNPEKEGGCLPLEPAKSRAHNIFSHSGQSMHPSAYGSSRNMNLKEEVVITGPDRVFTSRNSEMRKQNSYWHGRAAQLSRFSNSLAVRGDSRLDMGGDRNLNSQWLEDHFDTRSNHLPDGESNQLLDGTKHSHKKDFHLFGKDRAMDHAPKNCHINYSGPLFPPEDNLEEILKEHERQIQQAVRKARLAKENKKG 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00012 689 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Tsu08g00012 689 SMART serkin_6 126 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00012 689 MobiDBLite consensus disorder prediction 433 459 - -
Tsu08g00012 689 Coils Coil 659 686 - -
Tsu08g00012 689 SUPERFAMILY Protein kinase-like (PK-like) 119 418 IPR011009 -
Tsu08g00012 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Tsu08g00012 689 Gene3D Phosphorylase Kinase; domain 1 113 208 - -
Tsu08g00012 689 ProSiteProfiles Protein kinase domain profile. 126 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00012 689 MobiDBLite consensus disorder prediction 433 462 - -
Tsu08g00012 689 Gene3D Transferase(Phosphotransferase) domain 1 209 450 - -
Tsu08g00012 689 PANTHER KINASE CDK9, PUTATIVE-RELATED 77 682 - -
Tsu08g00012 689 PANTHER CELL DIVISION PROTEIN KINASE 77 682 - -
Tsu08g00012 689 Pfam Protein kinase domain 126 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00012 689 CDD STKc_CDK9_like 126 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00012 Tsu-Chr8 143074 147771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00012 118 453 Core Cell Cycle Gene Families AT5G10270 51.282 3.81e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu08g00012 Pkinase 9.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00012 - - cam:101495256 1034.25