Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00010 ATGGAAATCGAAGAATGTGTTCGAAAGGAGAAGAGGAAGgcaatgaagaagatgaagaggaaggaGAGAAGAAAGGAGATTGCCGAGAAAGAGCGTCTGGAGGAAGAAGCGCGCCTCAACGATCCCGAAGAACAGAGGAAGATGCTACTGTTGGAGCAGGAAGAGGCCGAGAGGATCGAAAGGGACAGGATCGCCTTTCAAGAGAGGGAAAACGATTGGAtcatcaaacaacaacaacgagaagtagaagaagaagaagacgatAACTTGAATAACACTGATAataaagaagaggaagaagatatCGAAGAAGAAGACGGTCCTCCGGAGATTATTTGGCAAGGAAACGAAATAATcatcaagaaaaagaagaagaagaagaagaaaaaggtgGAAAAGTCTTCCAACCTTCTCCACCACCACCAGCATGATGTCATCAGTGATAATAATAACAGAGCTACATCAAACCCCTTTCCCCCGGAGTCTCCCTCTCAAACTCACTCCACTTCAACACTTGTGGACAATAACAATGTTGCTCAACAATTACCTAATTTCGGAACTGAACTGGATAAAGCTCACTGTCCTTTTCATCTTAAAACAGCAGCATGTCGTTTTGGTGACCGTTGTAGCAGGGTCCATTTTTACCCGGATAAGTCATGCACCATTCTCATCAAAAACATGTACAATGGTCCTGGCCTTGCTTGGGAACAAGATGAAGGCCTTGAGTATACAGATGAGGAGGTTGAACACTGTTTTGAAGAGTTTTATGAGGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTACATACAGTACAAGTTGTTGGATTCTGCGCTGCTTGCTTACAAATCAGTTAATGGTCGCTATTACGCTGGGAAACAGGTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAGTCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGAGACTATGGATGGGCCGATTCAGACAGACCACCCCCGAAATTTTGGGTTAAGGAGATGGTTGCTTTATTTGGTCATTCTGATGATGACTATGATATCTCAAGGATCCATGAAAATTTTAGTGCACTGAAGCACTCCAGCAATGTCCCAAAAACAAATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAGGGAGACGGGTCAGTTAAATGGTGGTCGTTCTGGTAGAAGAAAAGAGGAAGATGAAAGTAAGCAAAGAACTCCTGATGAGGAGTGGAATACCAACTTTAAAGACAGCCATAAAAGGAAATGCAGGAACAGAACTCCTGATACTGATTCTGATAGGGAATGGTTAGAAGAGGTAGATAGGGAAAAGTACCATGAACATACAAGGAAAAATTCATTTAGTAGGACCAAGGATGGCAGTAGCAGAAGGCACGAAGAGTATTCTGATGTGGATAGGGTTACGATAAACAGGGACAATGAAAAGCAGCACGACAGAAAAGGAAGGAACTCACGAAAGTGGAACCGGGATAGTAGGGACTGGATTTTTGAGGCTGGATCTGATGAGGATAGTGATAGAAGAAGGAACCATAGTAGCCAAAGGAAAGGATCGAGACATCATAGCAGGGGCAACAGTAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGAACATGAAGATTATTCTGATGTGGATTGGGATGCTATGACTAGGGACGATGAAAAGCAGCATCGCAGCAGAGGAAGGAACTCACAAAAGTGGAACATGGATAGTAGGTACCGGATATATGAGGATGGATCAGACGAGGATAGACATAGAAAAAGCCATCATAGTAGCCAAATGAAAGAATCTAGACATTGCAGCAGGAGCAGCAGTTATGTAATCGATGAATCTGACAAAAATAGAGGAGAGATGGAAACACAACATGATCACTCTAGGAAAAGCTCAAGACTTCTTCAGGACTACTATGAGGACTTTGAGAATGAAAATGACAAGATTGATGGAGGTTGGTCTCAGAAAGAGAGTGACCGGCGAGCTGATCATCCCGGAAAGAAAAGATTAAAACACCAGAAGAAATTAGATTCCACCAATGGAGACAATAAGAATATAAGTCACGAAAAAATTGGAGAGTCGTCTAGCAAGATTCCAAGGAAGGAAAGACATGAAAAAAAGCAAAGGAAGTGA 2259 0.3988 MEIEECVRKEKRKAMKKMKRKERRKEIAEKERLEEEARLNDPEEQRKMLLLEQEEAERIERDRIAFQERENDWIIKQQQREVEEEEDDNLNNTDNKEEEEDIEEEDGPPEIIWQGNEIIIKKKKKKKKKKVEKSSNLLHHHQHDVISDNNNRATSNPFPPESPSQTHSTSTLVDNNNVAQQLPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTILIKNMYNGPGLAWEQDEGLEYTDEEVEHCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYIQYKLLDSALLAYKSVNGRYYAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYGWADSDRPPPKFWVKEMVALFGHSDDDYDISRIHENFSALKHSSNVPKTNSDRYHSRRSRSRETGQLNGGRSGRRKEEDESKQRTPDEEWNTNFKDSHKRKCRNRTPDTDSDREWLEEVDREKYHEHTRKNSFSRTKDGSSRRHEEYSDVDRVTINRDNEKQHDRKGRNSRKWNRDSRDWIFEAGSDEDSDRRRNHSSQRKGSRHHSRGNSNVTDESESDKDREHEDYSDVDWDAMTRDDEKQHRSRGRNSQKWNMDSRYRIYEDGSDEDRHRKSHHSSQMKESRHCSRSSSYVIDESDKNRGEMETQHDHSRKSSRLLQDYYEDFENENDKIDGGWSQKESDRRADHPGKKRLKHQKKLDSTNGDNKNISHEKIGESSSKIPRKERHEKKQRK 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00010 752 MobiDBLite consensus disorder prediction 545 752 - -
Tsu08g00010 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 320 IPR000504 GO:0003723
Tsu08g00010 752 MobiDBLite consensus disorder prediction 84 110 - -
Tsu08g00010 752 MobiDBLite consensus disorder prediction 22 44 - -
Tsu08g00010 752 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 213 IPR000571 GO:0046872
Tsu08g00010 752 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 350 IPR000571 GO:0046872
Tsu08g00010 752 MobiDBLite consensus disorder prediction 16 44 - -
Tsu08g00010 752 SMART rrm2_1 250 316 IPR003954 GO:0003676
Tsu08g00010 752 Coils Coil 75 95 - -
Tsu08g00010 752 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 8 580 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 MobiDBLite consensus disorder prediction 68 83 - -
Tsu08g00010 752 PRINTS U2 auxiliary factor small subunit signature 342 354 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 PRINTS U2 auxiliary factor small subunit signature 249 264 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 PRINTS U2 auxiliary factor small subunit signature 304 328 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 PRINTS U2 auxiliary factor small subunit signature 277 299 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 PRINTS U2 auxiliary factor small subunit signature 194 213 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 PRINTS U2 auxiliary factor small subunit signature 213 233 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu08g00010 752 MobiDBLite consensus disorder prediction 717 743 - -
Tsu08g00010 752 Gene3D - 219 318 IPR012677 -
Tsu08g00010 752 MobiDBLite consensus disorder prediction 409 530 - -
Tsu08g00010 752 CDD RRM_U2AFBPL 221 319 - -
Tsu08g00010 752 MobiDBLite consensus disorder prediction 120 136 - -
Tsu08g00010 752 SUPERFAMILY RNA-binding domain, RBD 252 320 IPR035979 GO:0003676
Tsu08g00010 752 ProSiteProfiles Zinc finger C3H1-type profile. 322 352 IPR000571 GO:0046872
Tsu08g00010 752 MobiDBLite consensus disorder prediction 68 171 - -
Tsu08g00010 752 MobiDBLite consensus disorder prediction 566 706 - -
Tsu08g00010 752 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 8 580 - -
Tsu08g00010 752 MobiDBLite consensus disorder prediction 399 530 - -
Tsu08g00010 752 SMART c3hfinal6 322 351 IPR000571 GO:0046872
Tsu08g00010 752 SMART c3hfinal6 189 215 IPR000571 GO:0046872
Tsu08g00010 752 Coils Coil 4 40 - -
Tsu08g00010 752 MobiDBLite consensus disorder prediction 148 171 - -
Tsu08g00010 752 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00010 Tsu-Chr8 128951 135497 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g00010 zf-CCCH 1.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00010 K24273 - cam:101495256 964.911