Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00009 ATGGAGTGGGAGGCAGAAGAGAAAAGGATTGAGATAGACAATGATGATCACATGATGATGAATCAGAAACAACCATTACTGTTGAGAAGGAGAATCAACAACACTTCTCAGCAGGCTATTGTTGGAGCCAATATTTGTCCCATTCAAAGTCTTGATTACGAATTAATTGAGAATGATCTGTTGAAGCAGGACTGGAGGTCAAGAACCAAGGTTGAGATATACCAATATGTTGTTCTGAAATGGACCCTTGCACttcttattggtttaattactggatttgttgggttttttaaCAACCTTGGAGTTGAAAATATTGCTGGTTTCAAACTCTTACTCACCAACAATCTCATGCTCAAGCAAAAGTATTATGAGGCATTTGCAGCATACGTCGGTTGTAACATGATTTTAGGGGTTGCGGCTGCAGCCCTGTGTGCTTACATTGCCCCTGCAGCAGCAGGTTCCGGCATACCAGAGGTAAAGGCATACCTCAATGGCATTGATGCGCATTCTATATTGGCTCCATCTACCCTCTTTGTCAAGATATTTGGTTCAATTTTAGGAGTTGCTGCTGGTTTCGTTGTGGGGAAAGAAGGACCCATGGTACATACAGGTGCTTGCATTGCTAATTTACTCGGACAAGGCGGTTCTCGTAAATATCGGCTCACCTGGAAATGGCTCAGATACTTCAAAAATGATAGAGATCGAAGGGATTTGATCACTTGCGGTGCAGCTGCAGGTGTTGCCGCTGCCTTCCGTGCTCCTGTTGGTGGTGTCCTTTTCGCACTCGAAGAAGCTGCTTCGTGGTGGAGGAGTGCTCTTCTATGGCGCACATTCTTTACCACCGCTGTAGTAGCAGTTGTTCTGAGGAGTCTTATACAATTTTGTCATCAAGGAGAAGGCAAATGTGGTCTCTTTGGCCAAGGAGGACTCATAATGTTTGATGTTAATTCTGCAAACCCTTCCTACACCACATTCGATCTCCTCGCAGTTATATTTCTCGGAGTTATTGGAGGTCTTATGGGAAGCCTTTACAATTATCTTGTTGATAAAGTCCTTCACACTTACACCACTGTAATTGAGAAAGGTCCAATATTCAAGATTTTACTGGTTATGATTATCTCGTTTGTGACATCTTGTATTCGGTTTGGGCTTCCATTGCTATCAAAGTGTGTGCCATGTCCAGGGGAGTGCCCTAGCCCCCCAACTGCAAGTTTCTCAATATACTATGACAATTTTCAATGTCCACCCAACCACTACAATGATCTCAGCTCTCTATTTTTCACTACCAACGACAATGCCATCCGCAACCTATTAAATGATAGCTCCAACTCTTCCAACGCCGGATTTCAGCTTTTAACTCTCGTAATTTTCTTCGTGGCAATATACTTGCTTGGAATTGTGACATACGGTGTTGCCATTCCCTCTGGTCTATTCATTCCAGTCATACTTGCTGGAGCTTCCTATGGGCGTCTAATAGGGACTGTGTTGGCTCAATTCACAGTTCTTGATACCGGTTTGTTTGCTCTCCTTGGAGCAGCATCCTTCCTTGGTGGAACCATGAGAATGACGGTTTCTCTCTGTGTCATACTTCTTGAGCTCACGAATAACTTGTTGATGCTACCATTGGTCATGTTGGTTCTCCTCATTTCTAAGACAGTGGCGGATTGTTTTAACAAAGGTGTTTATGATCAAATTGTGGAGTTTAAGGGACTGCCTTATTTGGAAGCACATGCAGAGCCGTACATGAGGAATTTAGTTGCAGGCGACGTTGTTTCTGGTCCactgttttctttttgtggGATCGAGAAGGTGGGGAATATTGTTCATGCTTTGAAGGTGACAACACATCATGGATTTCCTGTAATTGACGAGCCTCCTTTGACGGCTTCTCCTGAGTTGTGTGGGTTGGTATTGAGGTCTCATCTGTTGGTACTTCTCAAGCACAGGACATTGTTCACTAGGGAGAGAGTGATGACAGGAGCTACCATTATGAACAAGGTTAAGGCAAGTGATTTTGCGAAACCGGGTTTGGGGAGAGGGATAAGGGTGGAGGATTTAGACATTTCACAAGAGGATATGGAAATGTTTGTTGATCTTCATTCAATCACTAATACATCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTCCGGGAGCTTGGACTCAGGCACTTGCTCGTCGTGCCTAAGAAACCAGGAAGGCCTCCAGTTGTTGGGATCCTGACAAGGCATGATTTCATGTCTGAGTATATATTGGGGCTATTCCCCAACTTGAATCAAGGCTAA 2304 0.4288 MEWEAEEKRIEIDNDDHMMMNQKQPLLLRRRINNTSQQAIVGANICPIQSLDYELIENDLLKQDWRSRTKVEIYQYVVLKWTLALLIGLITGFVGFFNNLGVENIAGFKLLLTNNLMLKQKYYEAFAAYVGCNMILGVAAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSLIQFCHQGEGKCGLFGQGGLIMFDVNSANPSYTTFDLLAVIFLGVIGGLMGSLYNYLVDKVLHTYTTVIEKGPIFKILLVMIISFVTSCIRFGLPLLSKCVPCPGECPSPPTASFSIYYDNFQCPPNHYNDLSSLFFTTNDNAIRNLLNDSSNSSNAGFQLLTLVIFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLIGTVLAQFTVLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNKGVYDQIVEFKGLPYLEAHAEPYMRNLVAGDVVSGPLFSFCGIEKVGNIVHALKVTTHHGFPVIDEPPLTASPELCGLVLRSHLLVLLKHRTLFTRERVMTGATIMNKVKASDFAKPGLGRGIRVEDLDISQEDMEMFVDLHSITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKKPGRPPVVGILTRHDFMSEYILGLFPNLNQG 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00009 767 ProSiteProfiles CBS domain profile. 702 763 IPR000644 -
Tsu08g00009 767 Pfam Voltage gated chloride channel 137 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 SUPERFAMILY Clc chloride channel 58 577 IPR014743 -
Tsu08g00009 767 CDD ClC_6_like 49 574 - -
Tsu08g00009 767 SUPERFAMILY CBS-domain pair 578 755 IPR046342 -
Tsu08g00009 767 Gene3D - 576 755 IPR046342 -
Tsu08g00009 767 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 15 766 - -
Tsu08g00009 767 CDD CBS_pair_voltage-gated_CLC_euk_bac 577 755 - -
Tsu08g00009 767 PRINTS Chloride channel signature 244 263 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Chloride channel signature 473 493 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Chloride channel signature 180 199 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Chloride channel signature 149 166 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu08g00009 767 PRINTS Plant CLC chloride channel signature 279 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu08g00009 767 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu08g00009 767 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu08g00009 767 PRINTS Plant CLC chloride channel signature 265 273 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu08g00009 767 Pfam CBS domain 701 754 IPR000644 -
Tsu08g00009 767 SMART cbs_1 706 757 IPR000644 -
Tsu08g00009 767 SMART cbs_1 594 647 IPR000644 -
Tsu08g00009 767 Gene3D Clc chloride channel 72 575 - -
Tsu08g00009 767 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 15 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00009 Tsu-Chr8 122319 126061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00009 23 765 Ion Channels AT5G49890 74.866 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00009 K05016 - jre:108988922 1072.77