Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00006 atgagTGGAAGAATAGAATGGGTGAAGGGTAAAATGGTTGGATGTGGATCTTTTGGCAGTGTTCATCTAGCCATGAATAAATCCAATGGTGGACTTTTCGTAGTGAAAACATCGGATTCAGAGGTAGGATGTGATGCTTTGAAGAACGAGGTGAATATGCTAAATACTTTAAATAATTCATCACCCTATATTGTCCGATGTTTAGGGACAGAGTATGATAATAATCAAGATAAAAAAGTAGTGCATGTTTTCATGGAATACATGGCTGGAGGTAGTTTGGCTGATGTGTCAAACAAGTTTGGAGGTTCATTAGATGAAGATGTTGTACGTTTGTATACTAGACAAATTCTCCTTGGGTTATATGATCTTCACAAACACGGAATTGTGCATTGTGACCTTAATTGCAAAAATGTGCTTTTGTCCTCATCTGGGAACGTTAAGCTTGCTGATTTTGGGTGTGCAAAAAACATGAACAAACCATCATCACATCTTAATCTTACTAATGGTGGCACTCCTCTATGGATGGCTCCCGAAGTATTATTAAATGTTGATGATGAGAAAGTTGTTGATTTTGCTGCAGATATATGGTCTTTGGGGTGTACTGTTATTGAAATGGCCACTGGCAGGCCACCTTGGGCTGACAACctcatttttatttcaaatcCAATGGCTGCTATGTTTAAGATTGCTCGCGGTGATGAGATACCTCAATTTCCACTTCATTTCTCTCGGGAGGGTTTCGATTTCTTGAGGAGGTGTTTGGTCAGAGATCCCAGTAAGAGGCCTACCGCACAAGAGTTGCTTAACCACCCGTTTATTATTTCAACTACTTTAACTCATCACAAACACTACTCTGCATCCTCACCTGCAGCTGTCTTGGATGTTCATCAATTTGAGGATAccgatgatgatgaagaagaagactaCGACTACAAATTACACAGCCCAACAGAACGATTGAACCGGTTCTCAATCGCAAATGAGTTTGTGTCCCCACAAGGAACAACAATGTGGGAACTGGAAGATGCTGCATCAGGGAATCATTGGATCACTGTTAGACCAAGGGATCAATAA 1074 0.3892 MSGRIEWVKGKMVGCGSFGSVHLAMNKSNGGLFVVKTSDSEVGCDALKNEVNMLNTLNNSSPYIVRCLGTEYDNNQDKKVVHVFMEYMAGGSLADVSNKFGGSLDEDVVRLYTRQILLGLYDLHKHGIVHCDLNCKNVLLSSSGNVKLADFGCAKNMNKPSSHLNLTNGGTPLWMAPEVLLNVDDEKVVDFAADIWSLGCTVIEMATGRPPWADNLIFISNPMAAMFKIARGDEIPQFPLHFSREGFDFLRRCLVRDPSKRPTAQELLNHPFIISTTLTHHKHYSASSPAAVLDVHQFEDTDDDEEEDYDYKLHSPTERLNRFSIANEFVSPQGTTMWELEDAASGNHWITVRPRDQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00006 357 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Tsu08g00006 357 Pfam Protein kinase domain 9 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00006 357 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 353 - -
Tsu08g00006 357 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 5 353 - -
Tsu08g00006 357 SUPERFAMILY Protein kinase-like (PK-like) 7 324 IPR011009 -
Tsu08g00006 357 Gene3D Transferase(Phosphotransferase) domain 1 6 314 - -
Tsu08g00006 357 ProSiteProfiles Protein kinase domain profile. 7 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00006 357 CDD STKc_MAPKKK 6 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00006 Tsu-Chr8 88896 90448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00006 4 353 MAP Kinase Kinase Kinase AT4G26890 37.808 3.54e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu08g00006 Pkinase 9.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00006 K20716 - mtr:MTR_2g005290 521.546