Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00004 ATGGCTTCAAATCACTTGTCAGCTACAAGCAGCCGTGCAGGGGCAACTAATGATGCTTTATACAAGGAATTATGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCCCGTGAAGGGGAGAGAGTTTATTACTTCCCTCAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTACCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTACCTGAAACCGATCAAAGTGAGGTGACAAGCCCAGACGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCGTTTTGCAAGACACTTACAGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCACTGGACATGACTCAGCAGCCACCGTGGCAAGAATTGGTTGCAACTGATTTGCACGGGAATGAATGGCATTTTCGACATATTTTTCGCGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTgatgcatttatatttttaagGGGTGAAAATGGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATGTGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTTGGGGTTTTGGCCACTGCATCTCATGCCATTTCCACCGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGCGATTCAGAATGAGGTTCGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCGTCCGTTTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCGTCATCAATTCTGCGTCCAGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCCCTCCTGCAAACGCGCAGCCAACCCAACGAAACAAGAGATCGCGGCCTCCTGTTCTCCCTTCAACAATGCCCGATTCTTCTCTGCAAGGCATATGGAAATCACCAATTGAATCGCCTTTCCCTTATCGTGACCCTCAACATGGACGAGACCTCTATCCATCACCAAGATTCAGCTCTACTGCGACCAGCTTTCTTGGTTTTGGTGGGAGCAGCCCTGCTTCTAACAAGTCAATATATTGGTCAAGTAGATTGGAAAACTCTACTGAACCTTTTTTGCCTATAGCACTTAAAGAATCTGGGGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACAGTTCCTTTGTCAGGAAGGGTGGGTGATGATAGGTCTGTTCCGTCCTTGGATGCCGAGTCTGACCAACATTCCGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGCTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCATGAGTCACAAAGCAGACAAATAAGAAGCTGCACAAAGGTACATAACTGCTTTTAA 1668 0.4496 MASNHLSATSSRAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFRMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANAQPTQRNKRSRPPVLPSTMPDSSLQGIWKSPIESPFPYRDPQHGRDLYPSPRFSSTATSFLGFGGSSPASNKSIYWSSRLENSTEPFLPIALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTVPLSGRVGDDRSVPSLDAESDQHSEPSNVNRSDIPSVSCDADKSCLRSPHESQSRQIRSCTKVHNCF 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00004 555 Gene3D - 122 227 IPR015300 -
Tsu08g00004 555 CDD B3_DNA 123 225 IPR003340 GO:0003677
Tsu08g00004 555 MobiDBLite consensus disorder prediction 485 523 - -
Tsu08g00004 555 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Tsu08g00004 555 MobiDBLite consensus disorder prediction 360 392 - -
Tsu08g00004 555 SMART B3_2 125 227 IPR003340 GO:0003677
Tsu08g00004 555 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
Tsu08g00004 555 PANTHER AUXIN RESPONSE FACTOR 1 17 552 - -
Tsu08g00004 555 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Tsu08g00004 555 MobiDBLite consensus disorder prediction 354 408 - -
Tsu08g00004 555 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 552 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g00004 555 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu08g00004 555 MobiDBLite consensus disorder prediction 507 523 - -
Tsu08g00004 555 Gene3D - 288 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00004 Tsu-Chr8 68706 75905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00004 2 552 B3 DNA Binding Superfamily AT1G59750 71.892 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g00004 B3 9.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00004 K14486 - gmx:100793224 999.193