Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04754 atgaGTGATACaagtgataataataataataatctggGTGATTCCCCAGCCGTTGATATAACCGGCAAGATCATGGTGGTCGTCATAATAGTTCTCTTCATGActgttgtttcttttcttttcgttCATCTTTTTGCCAAGGGATTTTGGTGGAGCCAGAGGCGGCAGCGCCATAGCGACAACAATTCCCAATCCCAGAGGGGCCAACGAAGGAGGGATGGTCTTGATGCTTCTGTACTAAAGTCCCTACCCGTATCCGTATTCAATTCCAAAGAAGAAGATGGTTTGGATTTGGAATGTTCTGTTTGCCTGTCGGAAGTAGTTGAAGGTGAAAAATTGAGGGTTTTGCCTCAATGCAATCACAGGTTTCACATTGACTGCATTGATATGTGGTTCCAATCCCATTCAACTTGTCCCCTTTGCAGAACCACACTTGCAACTGCAACTCCGCCTCCTACTACCTTAGTAGTACAAGAAGAAGAATCATCCGCTGCTGCTTTTCCAACAAATGTCTTGATTTGGGGAAACCACAACCAAGTAATCTCTTCTACTACTACTTTGGAACAAAacatttcttcttcctcttccaatattaacaacaacaacacaaatgGAATGTTAACGATTGATATACCCAATGATTGTGACTGTGAGGCCACTGCTTCATCATCATCGCCCTTGGGGACAGCAGGAGGGAGATTGAATTCATTGAAGAGGCTTTTAAGCAGCAGAGCCTTAAGCAGCCTAAATCCATGGAGTcccacttcttcttcttcttctactacaCAACATGTCCAACAACAATCAAAACCAAAAGAAGCACCAGGACAGAGCTAG 837 0.3835 MSDTSDNNNNNLGDSPAVDITGKIMVVVIIVLFMTVVSFLFVHLFAKGFWWSQRRQRHSDNNSQSQRGQRRRDGLDASVLKSLPVSVFNSKEEDGLDLECSVCLSEVVEGEKLRVLPQCNHRFHIDCIDMWFQSHSTCPLCRTTLATATPPPTTLVVQEEESSAAAFPTNVLIWGNHNQVISSTTTLEQNISSSSSNINNNNTNGMLTIDIPNDCDCEATASSSSPLGTAGGRLNSLKRLLSSRALSSLNPWSPTSSSSSTTQHVQQQSKPKEAPGQS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04754 278 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 245 IPR044675 -
Tsu07g04754 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 148 IPR013083 -
Tsu07g04754 278 PANTHER RING-H2 FINGER PROTEIN ATL3 5 245 - -
Tsu07g04754 278 MobiDBLite consensus disorder prediction 248 278 - -
Tsu07g04754 278 SUPERFAMILY RING/U-box 93 149 - -
Tsu07g04754 278 Pfam Ring finger domain 99 142 IPR001841 -
Tsu07g04754 278 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Tsu07g04754 278 SMART ring_2 100 141 IPR001841 -
Tsu07g04754 278 CDD RING-H2_PA-TM-RING 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04754 Tsu-Chr7 51823416 51824735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04754 1 183 C3H Transcription Factor Family AT1G53820 35.193 2.46e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04754 - - mtr:MTR_7g117540 279.641