Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04749 ATGACGATTATCAGCATCAGCAGCAACAATGGATATTATTCATCATCACAATTTGGGGACACAACGCTGACCAAAGTGTTCGTTGGAGGACTTGCCTGGGAGACTCCCAAAGACACGCTCAGAGAACACTTTCAAAAGTACGGAGACATCCTTGAAGCTGTCATCATTTCCGATAAGCTTACCGGCAGATCCAAAGGCTACGGCTTTGTTACGTTCAAGGAACCAGAGGCGGCAAACAAGGCTTGCCAGGAACCAACTGTAATCATCAATGGTCGCCGAGCCAACTGCAATATCGCATCTCTCGGTGCTCGTCGCCCAAGGACAACATCCTCTTCTCCCACTGCTACTCCACcttcttctcctcctcctcctcttcctcttcctctagGAACCAAGTACCCAAGCAGCCAGGTGCACTGGTATTATCCGGTGGCCCCATTCCATCATCAACAAGCTCACGCCCTTCCTTTCTACGGGTACACACCCACCTACATTGCAACAGATCATCATCCCATGAATTACAATTACAACTATGGTTACAATTACAGTCATCAGAAGCTGAGCTATGGAATGTATCCAAGGGTGGGTGCGATGCCATTGCCATTGCCAGTGATGTACCACCCTCTCTACAGAACAGAGGCTATGGGTGTCCCTGCTGCACCTCAAATCTACCACCATAATTATGCTCCATCCATCACTCCTGCTCCTACTACATGTCCAGTTGGCACCGGTGAATGCTTCAAAAGAGTAGTGCATTGCTTCTCTTCTCATACTAACTATTTCTTTGCTATGGCGGAGGAACTGGATAAACCTTTGCTTGATCCCGATAATTTCAACCGTGAGGGCATTGATTTGGAGCGCATACCACTAGAGCAAGTATTTGAACAGTTGAAAACATCACCCAGAGGACTTTCATCGGATGATGCTGAAGCCCGACTTCACATATTTGGCCCAAACAAACTTGAAGAGAGGAAAGagaataaaatattgaaatttctTAGTTTTATGTGGAATCCTCTTTCATGGGTTATGGAAGCTGCAGCACTGATGGCAATTGTCCTTGCCAATGGCGGAGGGGAGGGTCCTGATTGGCAAGATTTTGTAGGGATTATATGCTTGTTGGTAATAAACTCAACAATTAGTTTTATAGAAGAAAATAATGCTGGTACTGCTGCAGCAGCATTAATGGCTCGCTTAGCTCCTAGAACAAAGGTTCTGAGAGATGGTCAGTGGCAAGAAGATGATGCAGCTATTTTAGTACCTGGTGATATAATCAGCATAAAGCTGGGAGATATCATTCCAGCCGATGCTCGTTTGCTCGAAGGAGACCCTCTCAAAATTGACCAGTCAGCCCTTACTGGAGAGTCCCTACCTGTCACAAAAAAAACTGGTGATGAGGTCTTTTCAGGTTCCACATGTAAACACGGAGAGATTGAAGCCGTAGTGATAGCAACAGGGGTTCATTCGTTTTTTGGAAAAGCAGCACACTTGGTTGACAGTACCGAAGTTGTCGGACACTTTCAGAAGGTTCTTACCTCAATTGGTAACTTCTGTATTTTCTCTATAGCTATAGGGATGATTCTTGAAATAATTGTAATGTTCCCTGTGGAGCACCGATCATACAGGGATGGAATCAACAACCTTCTTGTTCTCCTGATTGGAGGAATTCCCATTGCTATGCCAACAGTATTATCTGTAACGCTTGCCATTGGATCCCATCGACTTTCTCAGCAGGGAGCTATTACAAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTCCTATGCAGTGACAAAACGGGTACTCTTACGCTAAATCGCCTGAGTGTTGATCAAAATCTTATAGAGGTCTTTAACAACAATATGGACAAAGATATGATTGTTCTACTAGCAGCTAGGGCAGCTAGATTAGAAAATCAGGATGCCATTGATGCTGCCATTGTTAATATGCTAGCTGATCCAAAGGAGGCTCGTGCAAACATCACTGAAGTTCATTTTCTACCATTCAATCCCGTAGACAAACGTACAGCATTAACATACATTGATTCTGATGGCAACTTTTACAGGGCCAGCAAAGGAGCTCCAGAACAGATTCTAAATATGTGCCAAGAGAAAGACATGATTGCCGGAAAAGTGCATGCAATCATAGACAAATTTGCTGCAAGGGGATTGCGATCTCTTGCCGTTGCTTTTCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAAGTCCGTGGACTTTTTGTGGTTTATTGCCTTTGTTTGATCCACCGAGACACGATAGTGCTGAGACCATCCTAAGAGCCCTTAACCTTGGAGTTTGTGTTAAGATGATTACAGGGGATCAGTTGGCTATTGCAAAGGAAACGGGCAGAAGACTAGGCATGGGGACAAATATGTACCCTTCTTCATCTTTGTTGGGTCGCAACAAAGATGAGAATGAAGCTCTCCCAGTAGACGAACTCATTGAAAAGGCAGATGGATTTGCTGGTGTATTTCCtgAACACAAATATGAAATAGTCAAAATTTTACAAGAAAAGCATCATGTTGTTGGAATGACTGGAGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATTGGAATAGCTGTGTCAGATGCTACAGATGCTGCAAGAAGTGCTGCTGATATAGTCTTAACCGAGCCTGGCTTAAGTGTTATTATTAGTGCTGTGTTAACTAGCCGAGCTATATTTCAAAGGATGAAAAATTATACAATATATGCAGTCTCCATCACCATAAGGATAGTGCTTGGTTTTGTGCTCCTAGCATTAATCTGGGAGTATGATTTTCCACCCTTCATGGTCCTGATCATTGCAATCCTAAATGATGGTACTATCATGACCATAGCTAAAGACAGAGTAAAGCCATCCCCAACACCTGACAGTTGGAAACTGCCTGAGATATTTGCAACAGGAGTAGTGATTGGCACTTACCTTGCTTTGGTTACTGTCCTGTTCTACTGGGCAGTAGTTGAGACCACTTTCTTCGAGACCTACTTCCATGTGACCTCCCTATCCGGTGAGAGTGAGAAAGTTTCGTCGGCTGTATATCTGCAAGTTAGCATCATTAGCCAGGCTCTAATTTTTGTTACTCGTAGCCGTGGTTGGTCATTTCTAGAGAGACCTGGAGCTTTATTGATTTGCGCCTTTGTAATAGCTCAACTGGTGGCCACCTTAATTGCAGTTTATGCAAATATCAGTTTTGCTGAAATTCGAGGGATTGGATGGGGATGGGCTGGTGTTATATGGTTATTTAGTTTAATATTCTATGTACCCTTGGACATCATTAAGTTCACAGTGCGCTATGCCTTGAGTGGAGAAGCTTGGAATCTCCTATTTGATAGAAAGACTGCTTTTACATCTAAGAAAGACTATGGGACGGAAGATAGGGCTGCAAAGTGGGTTCTTTCACAGGGAAGTCTGCAAGGACTAAATCAGATGGCCTCAGGCTTGGAGGTCAGTGGAAGGCGGTCTTCTCTAATAGCTGAGCAGGCTAGAAGACGTGCAGAAATAGCCAGGTTGGGGGAGTTGCATACACTCAGAGGACATGTAGAGTCTGTTTTGAGACTCAAAAATTTAGACCTGAAGGCAATCCAATCAGCTCACACAGTCTGA 3648 0.4328 MTIISISSNNGYYSSSQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAANKACQEPTVIINGRRANCNIASLGARRPRTTSSSPTATPPSSPPPPLPLPLGTKYPSSQVHWYYPVAPFHHQQAHALPFYGYTPTYIATDHHPMNYNYNYGYNYSHQKLSYGMYPRVGAMPLPLPVMYHPLYRTEAMGVPAAPQIYHHNYAPSITPAPTTCPVGTGECFKRVVHCFSSHTNYFFAMAEELDKPLLDPDNFNREGIDLERIPLEQVFEQLKTSPRGLSSDDAEARLHIFGPNKLEERKENKILKFLSFMWNPLSWVMEAAALMAIVLANGGGEGPDWQDFVGIICLLVINSTISFIEENNAGTAAAALMARLAPRTKVLRDGQWQEDDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKKTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEVVGHFQKVLTSIGNFCIFSIAIGMILEIIVMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLSVDQNLIEVFNNNMDKDMIVLLAARAARLENQDAIDAAIVNMLADPKEARANITEVHFLPFNPVDKRTALTYIDSDGNFYRASKGAPEQILNMCQEKDMIAGKVHAIIDKFAARGLRSLAVAFQEVPEKSKDSPGSPWTFCGLLPLFDPPRHDSAETILRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRNKDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKHHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTIAKDRVKPSPTPDSWKLPEIFATGVVIGTYLALVTVLFYWAVVETTFFETYFHVTSLSGESEKVSSAVYLQVSIISQALIFVTRSRGWSFLERPGALLICAFVIAQLVATLIAVYANISFAEIRGIGWGWAGVIWLFSLIFYVPLDIIKFTVRYALSGEAWNLLFDRKTAFTSKKDYGTEDRAAKWVLSQGSLQGLNQMASGLEVSGRRSSLIAEQARRRAEIARLGELHTLRGHVESVLRLKNLDLKAIQSAHTV 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04749 1215 SFLD Haloacid Dehalogenase 580 907 - -
Tsu07g04749 1215 SMART rrm1_1 25 97 IPR000504 GO:0003723
Tsu07g04749 1215 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 370 619 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 831 941 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 SFLD p-type atpase 580 907 IPR044492 -
Tsu07g04749 1215 PANTHER CALCIUM-TRANSPORTING ATPASE 264 1195 - -
Tsu07g04749 1215 ProSitePatterns E1-E2 ATPases phosphorylation site. 600 606 IPR018303 -
Tsu07g04749 1215 SUPERFAMILY HAD-like 594 903 IPR036412 -
Tsu07g04749 1215 Gene3D - 8 113 IPR012677 -
Tsu07g04749 1215 PRINTS H+-transporting ATPase (proton pump) signature 828 844 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 PRINTS H+-transporting ATPase (proton pump) signature 714 732 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 PRINTS H+-transporting ATPase (proton pump) signature 1028 1049 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 PRINTS H+-transporting ATPase (proton pump) signature 856 872 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 PRINTS H+-transporting ATPase (proton pump) signature 887 912 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g04749 1215 Pfam E1-E2 ATPase 399 577 - -
Tsu07g04749 1215 SUPERFAMILY Calcium ATPase, transmembrane domain M 284 1115 IPR023298 -
Tsu07g04749 1215 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 303 1074 IPR006534 GO:0008553|GO:0016021|GO:0120029
Tsu07g04749 1215 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 264 1195 - -
Tsu07g04749 1215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 91 IPR000504 GO:0003723
Tsu07g04749 1215 Gene3D - 595 893 IPR023214 -
Tsu07g04749 1215 SUPERFAMILY RNA-binding domain, RBD 23 111 IPR035979 GO:0003676
Tsu07g04749 1215 Pfam Cation transporter/ATPase, N-terminus 288 350 IPR004014 -
Tsu07g04749 1215 CDD RRM_RBM24_RBM38_like 24 99 - -
Tsu07g04749 1215 Gene3D - 610 757 IPR023299 GO:0000166
Tsu07g04749 1215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 113 IPR000504 GO:0003723
Tsu07g04749 1215 SUPERFAMILY Calcium ATPase, transduction domain A 401 498 IPR008250 -
Tsu07g04749 1215 Gene3D - 1167 1215 - -
Tsu07g04749 1215 SMART Cation_ATPase_N_a_2 284 356 IPR004014 -
Tsu07g04749 1215 CDD P-type_ATPase_H 303 1109 IPR006534 GO:0008553|GO:0016021|GO:0120029
Tsu07g04749 1215 MobiDBLite consensus disorder prediction 99 128 - -
Tsu07g04749 1215 PRINTS P-type cation-transporting ATPase superfamily signature 752 763 - -
Tsu07g04749 1215 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Tsu07g04749 1215 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Tsu07g04749 1215 PRINTS P-type cation-transporting ATPase superfamily signature 598 612 - -
Tsu07g04749 1215 PRINTS P-type cation-transporting ATPase superfamily signature 774 784 - -
Tsu07g04749 1215 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Tsu07g04749 1215 Gene3D - 363 1083 - -
Tsu07g04749 1215 Gene3D - 401 485 - -
Tsu07g04749 1215 Pfam haloacid dehalogenase-like hydrolase 594 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04749 Tsu-Chr7 51792407 51804116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04749 264 1215 Primary Pumps ATPases AT1G17260 80.462 0.0 1538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04749 K01535 - zju:107434382 1652.11