Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04744 ATGGAAGGAGTGAGAGGGTATTGTTCTGATAGCAGGGAAGAAGAgggggaagaagaagaaggtgcaGAAGAAGAGATCATCCCAATCACAAGAGGAGGGTTACAGTTTGAGTTACAGACGACGTCACAACAGctggaagaagaagatgggAGGATGAATGAGGATAGAAAGCAGGTGGAGGAAGTAGATTTGATGGAGCTGAGATTAGGCGGAGGAAAAGGGAGCAAGAGCAAGGAGGAAGGAGGaagttcaaattcaaagaaGGTGgtagaggaggaggaggaggcaCCGGTGGTAGTGGAGAAAGAGCACATGTTTGACAAAGTAGTGACACCAAGTGACGTAGGGAAGTTGAATCGACTTGTGATTCCAAAGCAGTACGCAGAGAAGTACTTCCCATTGGATTCATCTAACGACAAAGGGATTCTTCTCAATTTTGAAGATCGGAATGGGAAAATGTGGCGGTTCAGATATTCCTATTGGAACAGTAGCCAAAGCTATGTGATGACAAAAGGATGGAGCCGTTTTGTGAAGGATAAGAAGCTTGATGCTGGTGACATTGTTTCATTTCACCGCGGCCGTCATGAATCATACAGACATAGGTTGTACATAGATTGGAGGCCAAGGTCTCACTCTCAGCAGTACTCTCAACATCCTCACCTCATCCCACCTCAATATCCTCCTAACATGTTCACCGCACTGCCTAATTTCTATCTTcccaatcatcatcatcactactcatcttcatcatcatcactataCACCCACCTACCTAATAATTACCCCGCCACCACTGCAATACATCCTCCTCCTTATCCTCAATATTACAACAACAATTTCTACACTACTAGTACTACacttcatcaacaacaacagtacCACCACCACCCTCCTCCTCCTATTGCTGAGTACCTCAATAATATGAATCCCCTCTATTACCTCCCCTCCTCGCCCATCACGCCCACAACAACAAGTGGTGGAGGCAGCGGCGGTGTTCATCAACACTTGCAGGGGCAAGGGCAACAACAAGATCAGAGAAATGTGAATGTCCCAATGAATATGATAATTGATTCTGTGCCGGTTGCACATCACAACCGTGGCGGCAATAATACTAATAGTagcggaaaacggctgaggctATTTGGGGTGAACATGGAATGTGAATCTACTTCTTCTGCTGCAACTGCAACAACATCAGGGGGAACTTCGGTGCTCTTTGATTTAGATCCCTCAAATTCTCAATATCGGCGCCAGCAGTGA 1260 0.3992 MEGVRGYCSDSREEEGEEEEGAEEEIIPITRGGLQFELQTTSQQLEEEDGRMNEDRKQVEEVDLMELRLGGGKGSKSKEEGGSSNSKKVVEEEEEAPVVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSNDKGILLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRGRHESYRHRLYIDWRPRSHSQQYSQHPHLIPPQYPPNMFTALPNFYLPNHHHHYSSSSSSLYTHLPNNYPATTAIHPPPYPQYYNNNFYTTSTTLHQQQQYHHHPPPPIAEYLNNMNPLYYLPSSPITPTTTSGGGSGGVHQHLQGQGQQQDQRNVNVPMNMIIDSVPVAHHNRGGNNTNSSGKRLRLFGVNMECESTSSAATATTSGGTSVLFDLDPSNSQYRRQQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04744 419 CDD B3_DNA 104 197 IPR003340 GO:0003677
Tsu07g04744 419 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 399 IPR044800 GO:0003700
Tsu07g04744 419 Pfam B3 DNA binding domain 106 206 IPR003340 GO:0003677
Tsu07g04744 419 MobiDBLite consensus disorder prediction 392 419 - -
Tsu07g04744 419 MobiDBLite consensus disorder prediction 47 93 - -
Tsu07g04744 419 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Tsu07g04744 419 SUPERFAMILY DNA-binding pseudobarrel domain 103 199 IPR015300 -
Tsu07g04744 419 Gene3D - 99 220 IPR015300 -
Tsu07g04744 419 SMART B3_2 106 210 IPR003340 GO:0003677
Tsu07g04744 419 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 66 399 - -
Tsu07g04744 419 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04744 Tsu-Chr7 51750063 51752614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04744 88 387 RAV Transcription Factor Family AT2G46870 46.302 2.75e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu07g04744 B3 2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04744 - - mtr:MTR_7g117455 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04744 07 51750063 51752614 Tsu07g04744 07 51750063 51752614 ECH