Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04742 ATGATGGATAAGGGTGATTCTCCTTCACCTGCTATATGCATGTTACAAGATACGTCTAAGATTAACATCGAAGATGATTTCTTGAACATAACTCCAATGACTACTATTGAAGCGTTAAAGGATATGAAAAtgGAGACAAGTTTGGTTGTTTGTGGTGTTGTGAAAGTGATActtgatgaagatgattggtTCTACACGGCTTGCATTTGTCACAAGAAAGTATATCCGGACGAAAAAATGTACTTTTGCGAGAAATGTAACAAGCATGTTGTTACCGTGTTCCCAAGatATCGCCTGAAGTTACGCATTATTGACTCCACCGATTCTGCAACATTTGTCGTGTTTGACCGCGATGGTGCAGAACTCTTCAAGAAATCGTGTTCTGACATGATTGATTCAATGGGGCCCAAGTCTAATGGTCCGCCAAAAGAGTTAATTGACATGGTGGACAAGACCTTTCTTTTTAAGGTGGATACCAATGTCAAGGAGGAAACTAGATATGAGAAATCCTATAGAGTTAAAAAGATGACCGATGATGTCGATGTAATTGCTAAATTTAAGGCAAAATATTCGGTTGGTGAGTATGTTGATGGTGGTTTGGAGGTTTCTATTGGTAATAGTGTGGAAGTTATGAATGACAATgATTTGCTAGAAAAATTTAGTGATGAGGCCGTCGTTCCTGAAAAGGTGACCATAGATCTCGATGAAATTGTTGATGGTGCTGATGTTTTGAAGATGGATTTTTCTGTTGTGGATTCAAGTGGTGGTGGTGTTACCCCCAACCTCAAGAAGGTCAAGATTGAGAAAGACTGA 813 0.3801 MMDKGDSPSPAICMLQDTSKINIEDDFLNITPMTTIEALKDMKMETSLVVCGVVKVILDEDDWFYTACICHKKVYPDEKMYFCEKCNKHVVTVFPRYRLKLRIIDSTDSATFVVFDRDGAELFKKSCSDMIDSMGPKSNGPPKELIDMVDKTFLFKVDTNVKEETRYEKSYRVKKMTDDVDVIAKFKAKYSVGEYVDGGLEVSIGNSVEVMNDNDLLEKFSDEAVVPEKVTIDLDEIVDGADVLKMDFSVVDSSGGGVTPNLKKVKIEKD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04742 270 Gene3D - 24 188 IPR012340 -
Tsu07g04742 270 SUPERFAMILY Nucleic acid-binding proteins 31 167 IPR012340 -
Tsu07g04742 270 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 16 131 - -
Tsu07g04742 270 PANTHER REPLICATION FACTOR A 1, RFA1 16 131 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu07g04742 270 CDD RPA1_DBD_C 50 189 IPR013955 -
Tsu07g04742 270 Pfam Replication factor-A C terminal domain 53 176 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04742 Tsu-Chr7 51718006 51719590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04742 35 130 Core DNA Replication Machinery Family AT4G19130 33.333 1.21e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04742 - - mtr:MTR_6g445520 247.669