Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04741 ATGGAGGAAGATGGTGGTGCGCCGCCGAATGCAGCTGCAAATAGGGTTTCACCTCCCTCTTACTGGTTGGATGCTTATGAGGATATCTCCTGCGATTTCATTGATTTTGATAACAACAATACTACTGCTGCAGCTACTGATGATGACGTGCTTCTTCCTACTCCCAATAATCAAGACTTTTTTGGTGGTATTGACGAATATTGGACAGCATCAAGAATCGGTGCTGGTCTCCCTCAACCACCTAATGCTAATTCTGATGATGCTGCTGTTGTTGCTGTTGCTGTCGAAgaccatcaacaacaacaactacaAGAATGCAACAAAAGGGCCCGCCTTTCCACCGGCTACAACAATCATGAGAGGAGAATCAATCATCAACCCACCAATGACAGGTTTGAGAGGtctttcaataataataataggaagagACCAAGGGATGGTGTGATGATTGATAgtaggaagaggaagaggccCGTAGGGAATAATAATCATCAAGATTTCAATAAAAGGGGTGGTTACTGGGAGAGGGATAAGTCTGGTTCCAATCACTTAGTATTCCGCTCTGGTAATTGGGAACCCAATTCTACCCGCcaagacaacaacaacaacaacaataacaataacgACAACATCAAACAGGAGGAGAATACCGATAACCTGCCTCCTAAGGAGGAGAAGCTTCCGGAGGAAAAAGCCAGACAGTATCAGTTGGATGTTCTTGACCAGGCAAAGAACAGAAATACCATTGCTTTTCTTGAAACTGGAGCTGGCAAAACCCTCATTGCTGTTCTTCTCATTAAATCTATACACCAGACTTTACATAACCAAAACAAGAAGATGCTTGCAGTCTTTCTGGTTCCAAAAGTTCCACTTGTTTATCAGCAAGCTGAAGTAATCCGTGAGCGCACCGGATATCAAGTGGGGCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACCAAACATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGGCACAGCATAATAAAAATGGAAGCAATAAATCTCCTTATTCTGGACGAGTGCCATCATGCTGTGAAGAAACACCCATATTCGCTGGTGATGTCCGAGTTCTACCATACAACGCCGAAAGAAAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTCTCCAGCCAAGTAGATTGCGCAATAAAAATTCGTAATCTTGAGAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTTCCTATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCAGCCAGTCTGTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAAAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTCGGTGAACTGGGACAGTGGTGTGCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAGATTTCAGGAATCTTATCTGAGTAAAGTTGTGTCTCTTCTGAAATGTCAACTGTCTGAGGGTGCTGTTTCGGACAAAAATGGAGTAGACGGCTCAGAGAATGGTGCAGCTCACAGTGGGTCTGATGAACATGAAGAGATTGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGCGGGGAGCATGTGGATGTCATAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCTTTGATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTATCTGCGTTAGTTCTACCCAAGGTTTTTGCCGAGCTTCCTTCTCTTAGTTTTGTGAAGTGTGCAAGCATGATTGGTCACAACAATAGCCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTATTAGTTGCCACTAGCGTCGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGATCTCGCGAAGACCGTTCTTGCATACATTCAGTCTAGGGGGCGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATCTACCAGGTGAAATCTACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGCCCTGAGTTCATTATGGAGAAGCATGAAAACCCTGGAGGTCCCACCGAATATTCTTGCAGGCTTCAACTGCCGTGCAATGCACCATTTGAAAATCTGGAGGGCCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTggaggagaaaaagaaaaggctgaGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACGACTCCAAATTGCTTCATCTTTATATGTATACCATAAAGTGCGAGAATGTAGGCCATTCAAAAGATCCGTTCTTGACTCAGGCTTCGGATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACCAAGGCATCTCTTGTCTTTAGAGAGTCAATAGATATCACAGAGAGTCAGTTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATGTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAAACAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGTACTAACGAGAGAACTTTAGGTGGCGATAGAAGGGAATACGGATTTGGGAAATTGCGACACGGCTTGGCTTTTGGGCAAAAATCCCATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCTGGATTGGTTCCTAACAGAGATTCCATGCAAACTCAAAAGCATATCAACATGACTAGCAAAGGAAAATTGATAATGGCAGATACCTGTACCAGTGCAGATGATCTGGTCGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGAAATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTCGGTCCTCTGGAATACAGTTCCTATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTGGTTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAGCACATGAAGGTGAATCTGAAGAGACTCAGGACAAAACTTACTATGTTTTCCTTCCTCCTGAGCTGTGCCTAGTACACCCACTGCCTGGATCACTCGTTCGTGGTGCTCAAAGGCTGCCTTCAATAATGAGGAGAGTTGAAAGCATGTTGCTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTTCAGGCTTCCAAGATCTTGGAGGCCTTGACTGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCGGAGCTTCTAGGAGATGCTTACCTTAAATGGGTTGTTAGTCGTTTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTACTGTACCAGTATGCATTAAGTAAAGGTCTTCAATCATATATCCTAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACGAAGGATGGGGAGTCCTCTTTATTTGACCAAGAGCAGTCAATTTGTAAGATTGAGAGGATGGACAACACTGATGGATTTGATGACGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTCGAAGCACTGATTGGGGTTTATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCAAATTGAGATTGATCCCGATGAGATGGAGTGTACAACAAAGCCATCCAGTGTTCCAGACAGCATACTGAAGAGTGTTGATTTTGATGCTTTAGAAGGTGCTCTAAATCTTAAGTTTAAAGACAAGGGGCTGCTGATAGAAGCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGCTGGAGTTTGTTGGTGATGCTGTCTTGGACCATCTTATAACCAAGCACTTATTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACCGACCTTCGAGCTGCTGCtgtaaacaatgaaaattttgCACGTGTTACAGTTAAACACAATCTTCACCTGCATCTGCGACATGGGTCCAGTGCTCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGGTTTAACTCGTTTGGTCTTGGAGACTGTAAAGCTCCCAAGGTCCTTGGAGACATCCTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGAAATACCGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGTCAACAGCAGGCCGAAGGTTTGGAGTACAGAGCAAGCCGTGCTGGCAATTTGGCTACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCTCTTGCTGCTTTGAAAGAGAAGGAAATGGAGAAAATTCAGGAGAAAAACGATGAAAACGGGACAAAGAATGGCAACCAGACATTTACTAGACAAACATTAAATGATATCTGTTTGCGAAGAAGCTGGCCTATGCCAATATACCGGTGTGTGAGTGAGGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCAGTGCGCATCAATACCACCGATAGAGGTTGGACGGATGAATGTGTTGGAGAGCCAATGCCTAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTGGAGCTAATAAACAACTTATACTCGTGA 5673 0.4298 MEEDGGAPPNAAANRVSPPSYWLDAYEDISCDFIDFDNNNTTAAATDDDVLLPTPNNQDFFGGIDEYWTASRIGAGLPQPPNANSDDAAVVAVAVEDHQQQQLQECNKRARLSTGYNNHERRINHQPTNDRFERSFNNNNRKRPRDGVMIDSRKRKRPVGNNNHQDFNKRGGYWERDKSGSNHLVFRSGNWEPNSTRQDNNNNNNNNNDNIKQEENTDNLPPKEEKLPEEKARQYQLDVLDQAKNRNTIAFLETGAGKTLIAVLLIKSIHQTLHNQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRKSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVRFQESYLSKVVSLLKCQLSEGAVSDKNGVDGSENGAAHSGSDEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASMIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENPGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNDSKLLHLYMYTIKCENVGHSKDPFLTQASDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITESQLASLKSFHVRLMSIVLDVDVEPCTTPWDPAKAYLFVPMVGDKSLDPMKQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMQTQKHINMTSKGKLIMADTCTSADDLVGRIVTAAHSGKRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETQDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQEQSICKIERMDNTDGFDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEIDPDEMECTTKPSSVPDSILKSVDFDALEGALNLKFKDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEMEKIQEKNDENGTKNGNQTFTRQTLNDICLRRSWPMPIYRCVSEGGPAHAKRFTFAVRINTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELINNLYS 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04741 1890 CDD DEXHc_dicer 231 430 - -
Tsu07g04741 1890 Gene3D Ribonuclease III domain 1547 1722 IPR036389 GO:0004525|GO:0006396
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 913 937 - -
Tsu07g04741 1890 Pfam Type III restriction enzyme, res subunit 240 398 IPR006935 GO:0003677|GO:0005524|GO:0016787
Tsu07g04741 1890 SMART PAZ_2_a_3 1174 1334 IPR003100 GO:0005515
Tsu07g04741 1890 ProSiteProfiles Ribonuclease III family domain profile. 1553 1701 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 SMART ultradead3 228 431 IPR014001 -
Tsu07g04741 1890 Gene3D - 226 470 IPR027417 -
Tsu07g04741 1890 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 827 922 IPR005034 GO:0016891
Tsu07g04741 1890 Pfam Ribonuclease III domain 1367 1512 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 Pfam Ribonuclease III domain 1588 1701 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 Gene3D Dicer dimerisation domain 822 924 IPR038248 -
Tsu07g04741 1890 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 416 IPR014001 -
Tsu07g04741 1890 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1812 1883 - -
Tsu07g04741 1890 CDD RIBOc 1569 1724 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 114 182 - -
Tsu07g04741 1890 Pfam PAZ domain 1195 1330 IPR003100 GO:0005515
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 183 215 - -
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 592 611 - -
Tsu07g04741 1890 Pfam Helicase conserved C-terminal domain 635 752 IPR001650 -
Tsu07g04741 1890 Gene3D Ribonuclease III domain 1335 1528 IPR036389 GO:0004525|GO:0006396
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 579 611 - -
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 916 937 - -
Tsu07g04741 1890 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 799 IPR001650 -
Tsu07g04741 1890 ProSiteProfiles PAZ domain profile. 1170 1310 IPR003100 GO:0005515
Tsu07g04741 1890 SMART DRBM_3 1813 1886 IPR014720 -
Tsu07g04741 1890 SMART DRBM_3 1728 1789 IPR014720 -
Tsu07g04741 1890 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1727 1790 IPR014720 -
Tsu07g04741 1890 SUPERFAMILY PAZ domain 1191 1310 IPR036085 GO:0005515
Tsu07g04741 1890 Gene3D paz domain 1189 1308 - -
Tsu07g04741 1890 ProSiteProfiles Ribonuclease III family domain profile. 1353 1512 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 ProSitePatterns Ribonuclease III family signature. 1588 1596 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 216 230 - -
Tsu07g04741 1890 SUPERFAMILY RNase III domain-like 1326 1530 IPR036389 GO:0004525|GO:0006396
Tsu07g04741 1890 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1812 1887 IPR014720 -
Tsu07g04741 1890 CDD SF2_C_dicer 632 762 - -
Tsu07g04741 1890 SUPERFAMILY dsRNA-binding domain-like 1816 1885 - -
Tsu07g04741 1890 Pfam Dicer dimerisation domain 827 915 - -
Tsu07g04741 1890 SMART helicmild6 668 754 IPR001650 -
Tsu07g04741 1890 SUPERFAMILY RNase III domain-like 1552 1722 IPR036389 GO:0004525|GO:0006396
Tsu07g04741 1890 MobiDBLite consensus disorder prediction 108 230 - -
Tsu07g04741 1890 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 197 1888 - -
Tsu07g04741 1890 SMART riboneu5 1568 1724 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 SMART riboneu5 1349 1532 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 SUPERFAMILY dsRNA-binding domain-like 1683 1811 - -
Tsu07g04741 1890 CDD DSRM_DCL_plant 1818 1886 - -
Tsu07g04741 1890 Coils Coil 1782 1802 - -
Tsu07g04741 1890 Gene3D - 1725 1803 - -
Tsu07g04741 1890 CDD RIBOc 1349 1534 IPR000999 GO:0004525|GO:0006396
Tsu07g04741 1890 Gene3D - 1818 1887 - -
Tsu07g04741 1890 Gene3D - 625 791 IPR027417 -
Tsu07g04741 1890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 766 IPR027417 -
Tsu07g04741 1890 PANTHER DICER-RELATED 197 1888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04741 Tsu-Chr7 51706694 51716965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04741 651 794 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 6.17e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04741 K11592 - gmx:100811631 3194.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04741 07 51706694 51716965 Tsu07g04741 07 51706694 51716965 ECH