Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04739 ATGGACGCTTACTCATCCGGAGAAGAAGTGGTTGTCAAGACAAGAAAACCGTATACAATCACAAAACAAAGAGAACGATGGACAGATGAGGAACACGATAGATTTTTAGAAGCCCTCAAGCTATATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAAACTGCTGTGCAAATCAGGAGCCATGCccaaaaattcttttcaaagTTGGAGAAGGAAGCACTTGTAAAAGGTGCTGCACTAGGACAAGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCGTATCCTCGTAAGACCAATGTTGGTACCCCAACATTACATAGTGGAGCAAAGTATGGAAAACCTCTTATTGCAGTTGGATCTTCGCATGGTAAACAGGCAATGGATTTTGAGAAAGAATCACCTCCAGAgAAGCATAAAGACGAGGAAAGGCCAACAACtggaaaagaaaataacaatgaaaattgtTCAAAAGTATTTACAATCCTCAAGGAGGCACCCTGTTCGTCTGTATCTTCAGCAATCCAGAGTTCAATCTCAAATTTAGTGCCACAGACAAACTCCTGCACCTTGAGGGATTTTACACCTTCGGTGAAAGAGGCAATAACTCGAGATAATACAAATGAATCTTTTCCTGCTACTGAGACTGAAAATCAGATGTTGGATATAGAGGACGGCAAACAAACACATAAGACTGATGGCACCTGTAAAACCTCTATGTTGGATAATTCTTGTTCTCCTAAATCGGTTCAAGTTGAGAAAACAGATGGTCTTACTTCGGCATTAACAATAGATGAGATGCAAAGTAATCAGAATTACCCAAGACATGTCACTGTGCACGTTGTTGATGGGAATCTTGGAACTAGCACTCAAACTCCATCACAAGATATGTTGATTCAAGACTCCACATTTCAGCCAATAGGAGGGATTAATGGGCAACGTAATCTTTTCACAAATTCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACATGGCACGATCCTCTATTCATCAATCATTTCCTCCTTGTCCTCCCTTTGCACAACATAATCATGATGATTACCAATCCTTTCTCAACATGTCTTCTACATTTTCAAGTCTTCTTGTCAGTACCTTGCTGCAACACCCTGCAGCGCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATATGGAAAGTTCAGCTGATTCTCCTGCTTGCTCTCAAGGAGCCTTTCCATCTAGACAAATTGGTTCACCTCCTGGTGTGGCAGCTATTGCAGCTGCTACGGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTGCTTCCTTTGTGCGCTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCATCGGCAACTGTAGTTCCGCCAACGAATCTTAGTGAAGCACCACCAAAGACAAAACAAGGAGATATTACACTACAAAATCCTCCTCTGCAAGATCAGATATTAGATCCAGAAGACTCGGAAGCTTTGCTAGCTCAACATTCAGCTTCCAAGTCACCGGCTGTTTCTTTATCTGAATCTGAGGAGAGTGGAGATGCCAAGTTAAATACTTCATCAAAGGCCACTATTAATCTTGACATAAACCAACCAATTTCTGAGAACCCTGATCTGAATAAAATGGAGGGCAGAAAACTGGTAGACAGGTCTTCTTGTGGTTCCAACACAACCTCTAGCTGTGAAGAGACTGATGCGCTAGAGAAGGATGGTAAAGAAAAGGAAGATTCCAAAGCACCTGAGGCAGACCATTTAGCCACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACCTTATTGATTCTTGGAAGGAGGTGTCTGAAGAGGGACGACTTGCCTTTCGGGCTCTATTCTCCAGAGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGATTTGATAGATAAGGATCAACAGATGGACAACATGAAGCATAACAAGCAAAATGTAGATGACAGAGATCAACTTGACAGCATGAAATGCAGTTTTAATTGTGACCGGGTGCAGCAAATCCTACCATTTGTACAAAATAACAATGAGGAGGATGGACTGCTAACCTTAGGTCTTGGACAAGGTAAGCTTAAGACTCGCCGAACAGGGTTTAAACCATACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGGGTTGGAACGGCTTGCAATCAAGTTGAAGAGACGGGTCCTAAGAGGATACGCCTGGAAGGGGGGACTTCTACTTGA 2268 0.4264 MDAYSSGEEVVVKTRKPYTITKQRERWTDEEHDRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGAALGQALDIDIPPPRPKRKPSNPYPRKTNVGTPTLHSGAKYGKPLIAVGSSHGKQAMDFEKESPPEKHKDEERPTTGKENNNENCSKVFTILKEAPCSSVSSAIQSSISNLVPQTNSCTLRDFTPSVKEAITRDNTNESFPATETENQMLDIEDGKQTHKTDGTCKTSMLDNSCSPKSVQVEKTDGLTSALTIDEMQSNQNYPRHVTVHVVDGNLGTSTQTPSQDMLIQDSTFQPIGGINGQRNLFTNSAASNTSESQNNMARSSIHQSFPPCPPFAQHNHDDYQSFLNMSSTFSSLLVSTLLQHPAAHAAASFAATFWPYANMESSADSPACSQGAFPSRQIGSPPGVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASATVVPPTNLSEAPPKTKQGDITLQNPPLQDQILDPEDSEALLAQHSASKSPAVSLSESEESGDAKLNTSSKATINLDINQPISENPDLNKMEGRKLVDRSSCGSNTTSSCEETDALEKDGKEKEDSKAPEADHLATDPSSRRYRSISNLIDSWKEVSEEGRLAFRALFSREVLPQSFSPPHDLIDKDQQMDNMKHNKQNVDDRDQLDSMKCSFNCDRVQQILPFVQNNNEEDGLLTLGLGQGKLKTRRTGFKPYKRCLVEAKENRVGTACNQVEETGPKRIRLEGGTST 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04739 755 MobiDBLite consensus disorder prediction 135 158 - -
Tsu07g04739 755 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Tsu07g04739 755 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Tsu07g04739 755 PANTHER PROTEIN LHY 2 737 - -
Tsu07g04739 755 MobiDBLite consensus disorder prediction 578 605 - -
Tsu07g04739 755 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Tsu07g04739 755 SMART sant 23 71 IPR001005 -
Tsu07g04739 755 MobiDBLite consensus disorder prediction 509 535 - -
Tsu07g04739 755 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Tsu07g04739 755 MobiDBLite consensus disorder prediction 470 497 - -
Tsu07g04739 755 Gene3D - 26 73 - -
Tsu07g04739 755 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Tsu07g04739 755 MobiDBLite consensus disorder prediction 88 162 - -
Tsu07g04739 755 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Tsu07g04739 755 PANTHER SWI/SNF COMPLEX-RELATED 2 737 - -
Tsu07g04739 755 MobiDBLite consensus disorder prediction 562 605 - -
Tsu07g04739 755 CDD SANT 26 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04739 Tsu-Chr7 51691568 51701472 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu07g04739 Myb_DNA-binding 8.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04739 K12133 - gmx:778086 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04739 07 51691568 51701472 Tsu07g04739 07 51691568 51701472 ECH