Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04733 ATGGGTGAAGCAACGATGCAGGCCAATAATCATCATGACTCAGTCCACAAGTTTTTACCTCCCACGATGCTTAGGGTATTGCTCGTCGAAGCTGATGATTCTACCCGCCACATTATTTCTGCACTTCTCCGTAAATGCGGTTACAAagTTGCTGCAGTTCGTGATGGCTTAAACGCTTGGGAGACATTGAAGAACAAATCATCTGAAATAGATCTCGTATTAACAGAAGTGGAGTTGCCATCAATATCTGGTTTTTCACTACTTACCTCAATCATGGAGCTTGACAATTGCAAAAACATTCCTGTCATAATGATGTCTTCTAACGATTCAGTTAGCACGGTGTTCAAATGCATGCTAAACGGGGCTGCCGATTTTCTCATTAAACCTGTTCGGAGAAATGAGCTTAGGAACTTGTGGCAACATGTGTGGAGAAGACATACTATTAGCATGCCTCctcaaaatataacatttccACAGAATAAACTTGACGTTGCTGCAGAAAACAATGCTGCAAGCAATAATTCTAGTGGTTCTGTGGCTTCCACGCAAAAAAATGTCGAACGCAGCGAAAAAACTAGTGAGGCTCAAGATATGTCCCAGCTGAAGAGTTCTTCATGTTTGAGCAATACCAGCCAGGCGAAGCATGAAAATTCTACCAGATATGAAAGGGAGTCTGCTGAGTATAATGAAGAAACTGGAGAGAAATCAACTATAATAGGATCTAAAGCTGCAGGGTATGACAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCCGTGATTGTATAGAAACAAAAAACCAAGATGAAGTGTTAAAAACAGAGTTTAGCAAAACCAATCCTCATACTAATACAAAGATTCATCAATGTAATGATGAAATAGAAGAACATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTCAGAATCTTCCAAAGAGCAGTTATGCAAATTGTAGTTTCAATGCTGGTGGTAACACAtccaattttgattttgatacaCAATTGGAACTTTCTTCACAAAGAGATTTTCCTGGAAGCTCACCTACACCTACCATTGAAGAAAGGCAAATATTGAATCATTCAAATGCTTCTGCGTTTTCTTTGTATGGCAACAGTACGTTGTTGAAGCATTTATTTCCAACAAAAAATTCGCATGAACCACAAAAATTATCGGCAAATACAAATATTGGTCATCAGTATGATATTAAAAAACTAAAGCAGGAAAATATCACCTATCTGGCAATTGGTCAGCCTGAACAAGTTGATGCAAAATCTCTTAACACTCAACTTAAATTCTTTCCTGCCACCGGGTCCACTTCTGATAATAAGTCTATGGAACATGATAATGTTTTTCATTCTATGTTTGATGCACAGTCAGGTATGCATCCCACATCGACACCAAAATCAATGTTCCAAAAAGAGAGTTCTCCGTTTCCCGCAAGTATTTCCTCCCACTCTAACCCTAAAAGTCAGAACTCAGAACCTCGCCACTGGTCAGATGATGCCACATATACTTGTGATCAAAACGTAAATGATCAAAGCAATATAGACTGCGACGACTCTCCATCTAACGGTCAAAGTTGTGGTACTAGTTTTTACCATGATGTGGAAAATTGCAACACTAGCGGTGTATGTGAAGAAGGCATAGGTAGCGGAAGTGATGGAAAAGCCCCTTCAGCTGTTGTAGGCAAGAACAACCTTGAAAGTTCTGTGAATAATGGTCACTACGATGGCACAAGTTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAATGAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAATCGGCCCCGGGTGAAAGGGCAGTTTGTTCGTCAAGTACACGGTGAACTTCCAGTAGCTGATACCGGAAGTTACTga 1929 0.3966 MGEATMQANNHHDSVHKFLPPTMLRVLLVEADDSTRHIISALLRKCGYKVAAVRDGLNAWETLKNKSSEIDLVLTEVELPSISGFSLLTSIMELDNCKNIPVIMMSSNDSVSTVFKCMLNGAADFLIKPVRRNELRNLWQHVWRRHTISMPPQNITFPQNKLDVAAENNAASNNSSGSVASTQKNVERSEKTSEAQDMSQLKSSSCLSNTSQAKHENSTRYERESAEYNEETGEKSTIIGSKAAGYDKISTGLRLGQSRDCIETKNQDEVLKTEFSKTNPHTNTKIHQCNDEIEEHSAGAIDLMATFQNLPKSSYANCSFNAGGNTSNFDFDTQLELSSQRDFPGSSPTPTIEERQILNHSNASAFSLYGNSTLLKHLFPTKNSHEPQKLSANTNIGHQYDIKKLKQENITYLAIGQPEQVDAKSLNTQLKFFPATGSTSDNKSMEHDNVFHSMFDAQSGMHPTSTPKSMFQKESSPFPASISSHSNPKSQNSEPRHWSDDATYTCDQNVNDQSNIDCDDSPSNGQSCGTSFYHDVENCNTSGVCEEGIGSGSDGKAPSAVVGKNNLESSVNNGHYDGTSSHRTSQREAALMKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVHGELPVADTGSY 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04733 642 Gene3D - 24 278 - -
Tsu07g04733 642 MobiDBLite consensus disorder prediction 169 235 - -
Tsu07g04733 642 MobiDBLite consensus disorder prediction 216 231 - -
Tsu07g04733 642 MobiDBLite consensus disorder prediction 169 186 - -
Tsu07g04733 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 191 IPR045279 GO:0009736
Tsu07g04733 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 195 620 IPR045279 GO:0009736
Tsu07g04733 642 MobiDBLite consensus disorder prediction 459 506 - -
Tsu07g04733 642 Pfam Response regulator receiver domain 26 137 IPR001789 GO:0000160
Tsu07g04733 642 SMART REC_2 24 139 IPR001789 GO:0000160
Tsu07g04733 642 ProSiteProfiles Response regulatory domain profile. 25 143 IPR001789 GO:0000160
Tsu07g04733 642 MobiDBLite consensus disorder prediction 196 215 - -
Tsu07g04733 642 MobiDBLite consensus disorder prediction 547 587 - -
Tsu07g04733 642 Pfam CCT motif 587 629 IPR010402 GO:0005515
Tsu07g04733 642 SUPERFAMILY CheY-like 22 150 IPR011006 -
Tsu07g04733 642 PANTHER PRR RESPONSE REGULATOR 13 191 - -
Tsu07g04733 642 PANTHER PRR RESPONSE REGULATOR 195 620 - -
Tsu07g04733 642 Coils Coil 599 619 - -
Tsu07g04733 642 MobiDBLite consensus disorder prediction 563 587 - -
Tsu07g04733 642 ProSiteProfiles CCT domain profile. 587 629 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04733 Tsu-Chr7 51642655 51647413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04733 565 631 Response Regulator Gene Family AT5G24470 58.333 1.87e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tsu07g04733 Response_reg 3.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04733 K12130 - gmx:100809490 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04733 07 51642655 51647413 Tsu07g04733 07 51642655 51647413 ECH
Tsu08g00810 08 8730346 8735577 Tsu07g04733 07 51642655 51647413 ECH