Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04730 ATGGCTGCCAACGTAACTACTACTCTGTCTCTCTCCTTCGCTGCCACAacctctccttcttcttcttctttccttGCTAGCAATACTTCCTCTAAACGATTCGTTTCATTTTCACCGCTTCCTTATCCTTCTTTCTCGCCTTGCAACTCCAAACCTAGGGCTCTTGTCAATGGACAAACGACAATTCTCCAACAACAACCAAACGACGTCGTTTCCGACCCAACTGAACTAGAACAACAACAGCAACCACTGAAGCTGCGAAATGCAACCGAACTCTACGTTTGCAACCTTCCTAGAACCTATGACACCCAACACCTACTCAATATCTTTACTCCTCACGGAACCGTTCTATCTGCACAgGTTTGCCGGAATGAGGAGACAGGTCAGAGTAAGGGAAGTGCTTATGTCAAGATGGGATCTTATAATGCTGCTAAAAATGCAGCTGCTGCACTGGATGGATTGGATGTTGAAGGGCGTGAAATGCGTGTTAAATTTTCAGTTCAGATGAATATTAAGAAGAATTTTGTAGAGACATTGAACACAAAGCCGTTGAGAACTATATACTATGAAGGTCCTCATAAGGTGTATGTTGGGAATCTTTCTAAGTCTGCTACACCTGAAGACGTCAGACATCTCTTTGGTAAATTTGGAAATGTGGCTAGTGTCAGGGTGTTGCAAGATTTGAAACAAGGGAAAAGTCGTGTCTACGCCTTTGTCTCTTATCTTTCTCAGACTGAACGTGATGCCGCTATGTCTCTCGGTGGAACTGAATTTTGTGGTCGAATTCTAGTGGTTAGATAG 801 0.4207 MAANVTTTLSLSFAATTSPSSSSFLASNTSSKRFVSFSPLPYPSFSPCNSKPRALVNGQTTILQQQPNDVVSDPTELEQQQQPLKLRNATELYVCNLPRTYDTQHLLNIFTPHGTVLSAQVCRNEETGQSKGSAYVKMGSYNAAKNAAAALDGLDVEGREMRVKFSVQMNIKKNFVETLNTKPLRTIYYEGPHKVYVGNLSKSATPEDVRHLFGKFGNVASVRVLQDLKQGKSRVYAFVSYLSQTERDAAMSLGGTEFCGRILVVR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04730 266 Gene3D - 56 174 IPR012677 -
Tsu07g04730 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 266 IPR000504 GO:0003723
Tsu07g04730 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Tsu07g04730 266 PANTHER OS02G0815200 PROTEIN 30 266 - -
Tsu07g04730 266 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 30 266 - -
Tsu07g04730 266 SUPERFAMILY RNA-binding domain, RBD 56 172 IPR035979 GO:0003676
Tsu07g04730 266 SUPERFAMILY RNA-binding domain, RBD 189 266 IPR035979 GO:0003676
Tsu07g04730 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Tsu07g04730 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 262 IPR000504 GO:0003723
Tsu07g04730 266 CDD RRM_SF 195 266 - -
Tsu07g04730 266 Gene3D - 178 266 IPR012677 -
Tsu07g04730 266 SMART rrm1_1 91 164 IPR000504 GO:0003723
Tsu07g04730 266 SMART rrm1_1 194 266 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04730 Tsu-Chr7 51633183 51634975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04730 90 265 Eukaryotic Initiation Factors Gene Family AT2G23350 27.473 5.43e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04730 - - adu:107486682 247.669