Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04727 ATGGCTATTTTCTCTCATCACTCTTCCGTCGTCTCCGATCTCCTTTCCTTCAATTTCAGTGTCAAAATGTCGCTTGGAGAGACTGCTTGCTCATACGCCCTTCTCATCCTTGAAGATGATAACATTGCCGCAACTGCTGACAACATCACCACTTTGTTGAAAAGTGCAAAGGTAGAAGTTGAATCCTTTTGGCCCGCCTTATTTGCTAAACTTGCtgagaagaaaaatattagGGATTTGATTGCCAATGCTGCtggcggtggtggtggtgcCGTAGCTGTTGCTGCAGCTCCAGCTGCTGCAGCCGCAGCTGCTCCTGCAGCTGCTGAGAAGAAGGAAGAGCcaaaagaagaggaagaaagtGACGAGGAAATGGGATTTGGCTTGTTTGATGAATAG 399 0.411 MAIFSHHSSVVSDLLSFNFSVKMSLGETACSYALLILEDDNIAATADNITTLLKSAKVEVESFWPALFAKLAEKKNIRDLIANAAGGGGGAVAVAAAPAAAAAAAPAAAEKKEEPKEEEESDEEMGFGLFDE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04727 132 Hamap 50S ribosomal protein L12 [rpl12]. 28 131 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tsu07g04727 132 Gene3D - 23 84 IPR038716 -
Tsu07g04727 132 MobiDBLite consensus disorder prediction 116 132 - -
Tsu07g04727 132 Pfam 60s Acidic ribosomal protein 45 130 - -
Tsu07g04727 132 MobiDBLite consensus disorder prediction 105 132 - -
Tsu07g04727 132 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 23 120 - -
Tsu07g04727 132 CDD Ribosomal_P1 27 83 - -
Tsu07g04727 132 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 23 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04727 Tsu-Chr7 51616198 51620345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04727 23 131 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.351 2.32e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04727 K02942 - gmx:100791962 106.301