Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04722 ATGTCAGAAGGTGCAGAGATTGACGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAGATGGACGATGATGTCGAGGAACAGATAGATGATGATGGAGTGGATGGGGGTGAAGATGAAAATGCTGAAGGTAGTGCTGAAGAACATGAATATGAGGAGTCGGCGGCAGAGGCTGGTGGTAAAGACCAATTTCCTGAAGGAGAAAAAAGTGACCGTGCCACTGAAGAAGATGACCAAAAGCCATCTCTCATTGATGACGAAGAGAAAGAGAAGCATGATGAACTTCTTTCTCTTCCTCCTCATGGTGCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACGCGTGACGATGATATAAGGGAATTGTGCGAGCCAATGGGTGATATTGTTGAGattaaattaattaaagacaGGGAAACTGGAGAAAGCAAGGGTTATGCTTTCGTGGCTTTTAAAACAAAGGATGTGGCACAGAAGGCCATCGATGATATACATAACAAGGAATTTAAGGGCAAAACTTTGAGGTGTTCGCTGTCTGAAACCAAACACAGGTTGTTCATCGGCAACATTCCAAAAACATGGACGGAGGACGAGTTTAGGAAAGCCGTTGAGGCTGTTGGTCCCGGAGTTGAAAGCATTGACCTCATAAAGGACCCACAAAATCAAAGCAGAAATCGTGGGTTtgcttttgttttgtattaCAACAATGCATGTGCTGATTATTCACGGCAAAAGATGGCAAGTTCGAATTTCAAGCTAGATGGAAATACACCAACTGTTACATGGGCAGATCCAAAGACCTCACCTGACAATTCAGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGATCAGCTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGCGTACAATACTGGACTCCATCCTAGCCATCTTCCTCATCCTGGCTATGGTAACTTTTCTGGAAATCTATATGGCTCAGTTGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATACGGCAGGGGTCCAATGCCAGCTGGAATGCAGATGGTTCCAATGGTCTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCCCGCAGAAATGACCGAGGCAATGGTCCAGGCGGTCAGGCAGGGCGTGGAGGAGGTAGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGACCCTATTAG 1440 0.4444 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSAEEHEYEESAAEAGGKDQFPEGEKSDRATEEDDQKPSLIDDEEKEKHDELLSLPPHGAEVFIGGLPRDTRDDDIRELCEPMGDIVEIKLIKDRETGESKGYAFVAFKTKDVAQKAIDDIHNKEFKGKTLRCSLSETKHRLFIGNIPKTWTEDEFRKAVEAVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMASSNFKLDGNTPTVTWADPKTSPDNSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNTGLHPSHLPHPGYGNFSGNLYGSVGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQAGRGGGSGNDDGNRNRRYRPY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04722 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Tsu07g04722 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 349 IPR000504 GO:0003723
Tsu07g04722 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 251 IPR000504 GO:0003723
Tsu07g04722 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Tsu07g04722 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Tsu07g04722 479 CDD RRM_SF 106 178 - -
Tsu07g04722 479 SMART rrm1_1 280 352 IPR000504 GO:0003723
Tsu07g04722 479 SMART rrm1_1 105 178 IPR000504 GO:0003723
Tsu07g04722 479 SMART rrm1_1 185 262 IPR000504 GO:0003723
Tsu07g04722 479 SUPERFAMILY RNA-binding domain, RBD 185 272 IPR035979 GO:0003676
Tsu07g04722 479 SUPERFAMILY RNA-binding domain, RBD 95 183 IPR035979 GO:0003676
Tsu07g04722 479 MobiDBLite consensus disorder prediction 49 96 - -
Tsu07g04722 479 PANTHER GEO13361P1-RELATED 2 477 - -
Tsu07g04722 479 MobiDBLite consensus disorder prediction 438 479 - -
Tsu07g04722 479 Gene3D - 185 265 IPR012677 -
Tsu07g04722 479 Gene3D - 267 388 IPR012677 -
Tsu07g04722 479 SMART rrm2_1 105 178 IPR003954 GO:0003676
Tsu07g04722 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 477 - -
Tsu07g04722 479 MobiDBLite consensus disorder prediction 1 96 - -
Tsu07g04722 479 Gene3D - 15 184 IPR012677 -
Tsu07g04722 479 CDD RRM3_hnRNPR_like 278 356 - -
Tsu07g04722 479 SUPERFAMILY RNA-binding domain, RBD 273 371 IPR035979 GO:0003676
Tsu07g04722 479 MobiDBLite consensus disorder prediction 8 48 - -
Tsu07g04722 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04722 Tsu-Chr7 51590398 51596632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04722 106 455 Eukaryotic Initiation Factors Gene Family AT2G23350 25.714 2.70e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04722 K13161 - gmx:100800974 718.383