Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04718 ATGGCTAAGATTATGAAAGTGATTCTAATCCAACGGTGGAGAGGCCAAGGGGAATATGAGATCAACCATGTATTAGAGATGGGAAGTGGTGAGAGAAGTGTTAGAGGGTTTCTTCTGCATGGGAAGAAGCAAGAGTTCAAAGATGTACCAAAAGGGTATCTTGCAATCAAGGTTGGTCAAGGAGAAGATCAACAGAGATTCGTGGTGCCAGTGATATACTTCAATCATCCACTTTTCATGCAACTTCTCAAAGAAGCAGAGGAAGAATATGGATTTGATCAGAAAGGAACCATAACCATTCCATGTCATGTTGAAGAGTTTAGAAACATTAGAGGTTTGATTGATAGAGAAAAGTCTCTTCATAACAACCATCATGTTAGATGCTTTGGCTTTTGA 396 0.3939 MAKIMKVILIQRWRGQGEYEINHVLEMGSGERSVRGFLLHGKKQEFKDVPKGYLAIKVGQGEDQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNIRGLIDREKSLHNNHHVRCFGF 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04718 131 Pfam Auxin responsive protein 44 110 IPR003676 GO:0009733
Tsu07g04718 131 PANTHER SMALL AUXIN-UP RNA-RELATED 41 125 - -
Tsu07g04718 131 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 41 125 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04718 Tsu-Chr7 51555099 51555877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04718 48 115 Calmodulin-binding Proteins AT3G43120 51.471 1.19e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04718 K14488 - pvy:116108881 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04718 07 51555099 51555877 Tsu07g04718 07 51555099 51555877 ECH
Tsu08g00858 08 9350193 9350972 Tsu07g04718 07 51555099 51555877 ECH