Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04711 ATGGCTGCTCTCGAAGCTATTTCTCAAATTACAGACTTCGTTTCCGAGTTTGTATTTGCTTCAGACAATGTCCTTGTCAAGAAAGGTAGTTTTAAGGAACTTGGAGATTACTTGCAAAGAATTGCACCTATTTTAACACAATTGAGGAAAGAAAAGGTCAGTGATTCCGAGACATTCAACAACGCCATTGAGATTCTCAATCGTGAAATCAAAGATGCAAAGAAACTGGTTCAAGAATGTAGCAACAAGAGCAAGGTATATCTCCTAGTCAACTGCAGAACTGTTGCTAAGCGCTTAAAACACAGCACAAGTGAGATCAGCAGGGCAATTGGACTTCTTCCTTTGGCTACATCAGGGCTTTCTGCTGGAAcaattgaagaaattgaaaggtTATGTGTCAATATGCAGGCCGCTGAGTTTAAGGCAGCCGTATCAGAAGAAGAGATATTAGAGAAAATCGAGTTAGGGATACAGGAAAAGAATTTCGACCGTTCCTATGCAAATGATTTGCTGCTTCTCATTGCAGATGCTCTTGGGATTACAAAAGAGCGGTCGACATTAAAGAAAGAGCTTGAAGAGtttaaaagtgaaattgaaAATGAGAAAGACCGGGCTGAAGCCATACAAATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCCTCGTCAACCAAGGAAAAGGAACTCAAATACATTGCAAAACGAGATTCTCTGGGTACTCAACCCTTGGAGCCTTTACAGTCCTTTTTTTGCCCCATTACTCAGGATGTTATGGTTGACCCTGTGGAAACTTCATCTGGGCAAACATTTGAGAGAAGTGCAATTGAAAAGTGGTTTGCGGAAGGACAAAAAATGTGTCCTCTGTCTGGCATTACTTTAGACACATCGATTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAGAGATAGGAATACAGTGATTACAATTGCTTCAATGAGAGAAAAAATCCAATCTGGAGATGAAGTTGGAGTATTGCATTGCCTGCAAACTCTTCAAGGTTTGTGTGAACAAAAGGACCAGCACAGAGAATGGGTGGTACTGGAGAATTATATACCAGTTCTTATCCAATTTCTTTCTGAAAAAAACCGCGATATAAGGAATCACATCCTTGTCATCCTTTGCATGCTGGTGAAAGATAACGAAGATGCCAAGGAAAGAATTGCAAAAGTAGATAATGCAATCGAGTCTATTGTCCATTCTCTTGGGCGTCGTTTGGGGGAAAGGAAGTTGGCTGTGGCATTACTTCTGGAACTGTCCAAATATGATTTGTTAAGAAAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGACAGTCAAGCTGCCAGAGATGCAACAGAGTTACTGGAGAAGCTTTCATGCTATGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTGAAGATGATTATGGTCAAAATGTTAGCAGAAATGGAGTCAACAGACCACAATAAGGAGATCTTGTTTGACAGTGGTATTCTGGCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAATTGGTTGCCCTTAAAGCTCTACAGAATCTATCTAGTTTAAAGAAAAACGGACTCGAAATGATTCGACAAGGTGCAGCGCGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCCTTCCTCAAGTTTGTCAGAACATGTAGCTCCCATAATTATGCAACTTGCTGCATCTACCATCTCTCAGGATACACAGACACCAGTTTCATTGTTAGAATCCGATGAAGATGTTTTTAACCTTTTCTCTCTAGTTAGCTACACAGTGCCTGATGTGCGACAATATATTATCCAGACTTTTTATGCCCTCTGTCAGTCGCCGTCAGCTTCAGATATCAAGAACAAGCTAAGAAAGTGCCCATCGGTTCTTGTATTGGTCAAGTTGTTTGAGAATGAAAGCCTAAATCTCCGAGCAAGTGCTGTCAAGCTGTTTTCTTGCCTGGTTGAAAGCAGTGATGAAGCTACCATATTGCAGCATGTGAATCAGAAGTGTGTTGAGACTTTACTCCAGATCCTGAAATCTTCATCTGACGAAGAGGAAATTGTTTCTGCTATGGGAATAATACACTATCTTCCGAAAATTGAACAGATCACTCAGTGGCTTTTGGATGCTGGGGCGTTGCCAATCATTTGTAATTATATCCAAGAAGGGAAGGACAAAGATCTCCAAAAGAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTATGTCGTTTTACAGTTCCAACAAAATTGGAATGGCAAAAGCGTGCGGCCGAAACTGGGATTATAACTGCTTTAGTACAGTTGCTTGAAAGTGGAACTGCTCCAACAAAACAGCTAGCAGCACTGTCCCTAACTCAATTTTCTAAAAGCTCACAAGAAGTAAGCAGTCCAATGCCGAAGCGCAAGGGATTTTGGTGCTTCTCAGCCCAAACAGAAGCCGGATGCTTAGTTCATGGTGGTGTATGCACCGTGGAATCATCATTTTGCCTTTTGGAGGCTGATGCAGTAGGACCACTAGCAAAAACTCTCGGGGAATCTGATTTTGGAGTGTGTGAGACTTCTTTAGACGCTCTTCTAACTTTAATTGATGGGGAAAAGCTGCAGAGTGGTAGTAAAGTGCTTGCAGATAAAAATGTCATACCACTAATAATAAGATTTCTCGGCTCCCCTTCCCCGGGATTGCAGGAAAAGTCTCTTAATGCTTTGGAAAGGATTTTCCAGTTGTTGGAGTTCAAACAGAAATATGGAGCTTCAGCTCAAATGCCTCTGGTTGATTTAACGCAGCGGGGTAATGGCAGTGTTAAATCCATGGCAGCTCGAATTCTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTCTAA 2979 0.4079 MAALEAISQITDFVSEFVFASDNVLVKKGSFKELGDYLQRIAPILTQLRKEKVSDSETFNNAIEILNREIKDAKKLVQECSNKSKVYLLVNCRTVAKRLKHSTSEISRAIGLLPLATSGLSAGTIEEIERLCVNMQAAEFKAAVSEEEILEKIELGIQEKNFDRSYANDLLLLIADALGITKERSTLKKELEEFKSEIENEKDRAEAIQMDQIIALLERSDAASSTKEKELKYIAKRDSLGTQPLEPLQSFFCPITQDVMVDPVETSSGQTFERSAIEKWFAEGQKMCPLSGITLDTSILRPNKTLKQSIEEWRDRNTVITIASMREKIQSGDEVGVLHCLQTLQGLCEQKDQHREWVVLENYIPVLIQFLSEKNRDIRNHILVILCMLVKDNEDAKERIAKVDNAIESIVHSLGRRLGERKLAVALLLELSKYDLLRKYIGKVQGCILLLVTMSSSEDSQAARDATELLEKLSCYDQNVILMAKANYFKHLLQRLSTGPDDVKMIMVKMLAEMESTDHNKEILFDSGILAPLLHLVSHNDVQMKLVALKALQNLSSLKKNGLEMIRQGAARLLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQTFYALCQSPSASDIKNKLRKCPSVLVLVKLFENESLNLRASAVKLFSCLVESSDEATILQHVNQKCVETLLQILKSSSDEEEIVSAMGIIHYLPKIEQITQWLLDAGALPIICNYIQEGKDKDLQKSKLVENSVGALCRFTVPTKLEWQKRAAETGIITALVQLLESGTAPTKQLAALSLTQFSKSSQEVSSPMPKRKGFWCFSAQTEAGCLVHGGVCTVESSFCLLEADAVGPLAKTLGESDFGVCETSLDALLTLIDGEKLQSGSKVLADKNVIPLIIRFLGSPSPGLQEKSLNALERIFQLLEFKQKYGASAQMPLVDLTQRGNGSVKSMAARILAHLNVLHDQSSYF 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04711 992 Pfam Armadillo/beta-catenin-like repeat 517 557 IPR000225 GO:0005515
Tsu07g04711 992 Coils Coil 56 83 - -
Tsu07g04711 992 SUPERFAMILY ARM repeat 324 982 IPR016024 -
Tsu07g04711 992 Gene3D - 616 984 IPR011989 -
Tsu07g04711 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 324 IPR013083 -
Tsu07g04711 992 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Tsu07g04711 992 Gene3D - 422 615 IPR011989 -
Tsu07g04711 992 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Tsu07g04711 992 Gene3D - 1 117 IPR036537 GO:0007166
Tsu07g04711 992 CDD RING-Ubox_PUB 251 292 IPR045210 -
Tsu07g04711 992 SUPERFAMILY RING/U-box 238 319 - -
Tsu07g04711 992 Pfam U-box domain 251 317 IPR003613 GO:0004842|GO:0016567
Tsu07g04711 992 SMART arm_5 694 736 IPR000225 GO:0005515
Tsu07g04711 992 SMART arm_5 904 944 IPR000225 GO:0005515
Tsu07g04711 992 SMART arm_5 351 391 IPR000225 GO:0005515
Tsu07g04711 992 SMART arm_5 393 433 IPR000225 GO:0005515
Tsu07g04711 992 SMART arm_5 737 783 IPR000225 GO:0005515
Tsu07g04711 992 SMART arm_5 517 557 IPR000225 GO:0005515
Tsu07g04711 992 Coils Coil 184 211 - -
Tsu07g04711 992 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Tsu07g04711 992 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 992 - -
Tsu07g04711 992 Gene3D - 325 421 IPR011989 -
Tsu07g04711 992 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04711 Tsu-Chr7 51526514 51531609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04711 249 992 U-box Gene Family AT1G76390 27.700 1.29e-55 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04711 - - gmx:100799969 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04711 07 51526514 51531609 Tsu07g04711 07 51526514 51531609 ECH
Tsu08g00878 08 9625019 9630177 Tsu07g04711 07 51526514 51531609 ECH