Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04706 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCATAGAGGTCCATGGACTTCTCGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGTGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTCTTAGATGCGGAAAAAGTTGCAGACTTCGATGGATGAACTATCTGAGACCGGATATAAAGAGAGGAAACATAACTCCAGATGAAGATGATCTCATTATGAGAATGCATTCAATTCTTGGAAATAGATGGTCTCTTATCGCCGGAAGGTTACCCGGGCGTACAGATAATGAGATAAAGAATTACTGGAACACAAATCTCAGTAAAAAGCTCAAAAAACAAGAACcactagagaagaagaagaataaaaagatgaagaagaatgacAAGAACAAAGTCATAACCAAAGTACCAGAAGATTCAGATAAGAAgaccttagtttatataccaaaggCTATAAGGATCGAGAAGAATTTATCATCTATAATACCAAGAACTGATGGTACCTTAAACTTGGAATCCAAGTCAGTAACAACAAGCCAAGAGGAAGCGCAAAATgcagaaacaaatgaaggagaCAATGATGTATTTGGATTGTTCTTTGGTGAACAGTACCATGAAGACTTGGTCAACCTTAACAATGATGACATGGAATGCCAATCTGGTTTTCTTGAGAAGATGTATGAAGAGTACTTGCAGCTTttgaagaatgaagaaaatcatgaaaaattgTTAGACTCTTTTGCTGAGTCCTTATTGGCGtga 780 0.3333 MGRAPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIMRMHSILGNRWSLIAGRLPGRTDNEIKNYWNTNLSKKLKKQEPLEKKKNKKMKKNDKNKVITKVPEDSDKKTLVYIPKAIRIEKNLSSIIPRTDGTLNLESKSVTTSQEEAQNAETNEGDNDVFGLFFGEQYHEDLVNLNNDDMECQSGFLEKMYEEYLQLLKNEENHEKLLDSFAESLLA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04706 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g04706 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g04706 259 CDD SANT 16 61 IPR001005 -
Tsu07g04706 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu07g04706 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g04706 259 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 238 - -
Tsu07g04706 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g04706 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu07g04706 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu07g04706 259 CDD SANT 71 112 IPR001005 -
Tsu07g04706 259 Gene3D - 14 66 - -
Tsu07g04706 259 SMART sant 66 114 IPR001005 -
Tsu07g04706 259 SMART sant 13 63 IPR001005 -
Tsu07g04706 259 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 238 - -
Tsu07g04706 259 Gene3D - 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04706 Tsu-Chr7 51500282 51501259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04706 1 116 MYB Transcription Factor Family AT5G49330 75.000 2.20e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g04706 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04706 K09422 - gmx:778044 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04706 07 51500282 51501259 Tsu07g04706 07 51500282 51501259 ECH
Tsu07g04706 07 51500282 51501259 Tsu08g00894 08 9774264 9775704 PCT