Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04701 atGGGATCAACAAACCGCATGTTATGGGATGAACAAGAAAAATCCATGGTTGGAGCTGTTCTTGGTGGTAGAGCTTTGGATTTCTTGATAACAAACTGTTTATCAAATGAGAGTGTTTTGATTGCTGTTGGTGCTACTGATGATTCTCTTCAAAACAAGCTCTCTGATCTTGTTGAAAATTCATCCAATTTCAACTGGAACTATGCTATTTTCTGGCAACTTTCTCAGTCAAAATCCGGTGATTATGTTCTTGGTTGGGGAGATGGATGTTGCAGAGAAccaagtgaagaagaagaacaagaaagtGGTGGTGGAGTTAAAGGAATTCTCAGTCTTGGCAtggagaaaaaagaagaagaagatggggTGAAGCAGAATATGAGAAAGAGGGTTTTGCAGAAGCTACACACAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTacttttcttttccaaaagGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGCTAAACATTTATGGTTCAAATCTGTTTCTGATTATTGCGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACCGTTGTTTTACTACCTACTGATTTTGGTGTTCTTGAGTTGGGTTCTGTTAGAATCTTACCTGAAAACTTTGAATTGTTAAAAACTGTTAAttctttgttttcaatttcaactaTTTCCACCACACAATCATCATCATTGTATCCTAGGGTCATTAATGAAGGAAGAGATGAAAGTGCTATTTCAAATACTGTTCAAATTCCAAAGGTTGTTTTGAGTTTGAACAATAATGGTCGTACACATTTTAGAGAGAAACTTGCTATTAGGAAAATGGATCATAGTAGCAGCATTAACTTTCCTAGTTCTAGAAATGGTGTTTGTGGTGGTTCTAGTTGGGGAGTGAATCAAGGTCAAGGTGAAATTTTTGCTCCTGATGGTGTGAGAAAGGATTTTAGGCTTAACAATAACAGCAACTATCAACCACAAAGACAGGTTCAAATGCAAATGGAAATTGATTTTTCGGGAGCGAATTTGAGGGCTAATTCTGTGAGACCGGTTATTGGTGAACCGGAACTTGCTGCTGATGTTGAGGCTGATCAACCTAGTGATGGAAGGAGGCCGAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCGCTCAATCATGTGGAGGCGGAGAGACAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCCTTAAGAGCTGTTGTACCTAACATCTCCAAGATGGACAAGGCATCCTTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAAGCGAAACTCAATGTCATGGAGTCTGAGAGAGAGACATTTGGAAGCAGTACTTCGAAGGATGGATCGGCCAGCTCGAGATCAGAAAATCTTCCTCAGAACATTAGAGTTCCTCCTCCTGATGTCGATATTCAAGCTTCTCAGGATGAGGTAATTGTGAAGGTGAGTTGTTCTCTTGATACTCATCCTGTTTTGAAAGTAATGGAAACATTCAAAGAGGCACAAATCAGTGTTGTGGATTCGAAACTCGCTGCTGCAAATGATACTATCTACCATACTTTTGTAATTAAGTCACAAGGATCTGAACAGCTTACTAAGGACAAGTTGATTGCAACATTTTCCCGAGAATCCAACGCTTTACAGATATAA 1734 0.3835 MGSTNRMLWDEQEKSMVGAVLGGRALDFLITNCLSNESVLIAVGATDDSLQNKLSDLVENSSNFNWNYAIFWQLSQSKSGDYVLGWGDGCCREPSEEEEQESGGGVKGILSLGMEKKEEEDGVKQNMRKRVLQKLHTAFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFASAKHLWFKSVSDYCVRSFLAKSAGIQTVVLLPTDFGVLELGSVRILPENFELLKTVNSLFSISTISTTQSSSLYPRVINEGRDESAISNTVQIPKVVLSLNNNGRTHFREKLAIRKMDHSSSINFPSSRNGVCGGSSWGVNQGQGEIFAPDGVRKDFRLNNNSNYQPQRQVQMQMEIDFSGANLRANSVRPVIGEPELAADVEADQPSDGRRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLNVMESERETFGSSTSKDGSASSRSENLPQNIRVPPPDVDIQASQDEVIVKVSCSLDTHPVLKVMETFKEAQISVVDSKLAAANDTIYHTFVIKSQGSEQLTKDKLIATFSRESNALQI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04701 577 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 241 IPR025610 -
Tsu07g04701 577 CDD bHLH_AtAIB_like 403 467 - -
Tsu07g04701 577 SMART finulus 412 461 IPR011598 GO:0046983
Tsu07g04701 577 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 409 469 IPR036638 GO:0046983
Tsu07g04701 577 MobiDBLite consensus disorder prediction 466 495 - -
Tsu07g04701 577 MobiDBLite consensus disorder prediction 466 488 - -
Tsu07g04701 577 Pfam Helix-loop-helix DNA-binding domain 410 456 IPR011598 GO:0046983
Tsu07g04701 577 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 406 455 IPR011598 GO:0046983
Tsu07g04701 577 MobiDBLite consensus disorder prediction 376 414 - -
Tsu07g04701 577 PANTHER MYC 7 573 IPR045084 GO:0003700|GO:0006355
Tsu07g04701 577 MobiDBLite consensus disorder prediction 400 414 - -
Tsu07g04701 577 Gene3D - 400 470 IPR036638 GO:0046983
Tsu07g04701 577 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 7 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04701 Tsu-Chr7 51462352 51464493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04701 6 576 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.142 5.48e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g04701 bHLH-MYC_N 9.1e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04701 - - cam:101513355 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04701 07 51462352 51464493 Tsu07g04701 07 51462352 51464493 ECH
Tsu07g04701 07 51462352 51464493 Tsu08g00910 08 9974787 9978266 PCT