Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04696 ATGGACTCTCCATCAGGTGGCTGTCCTAAATTGGCGGCGAAGCCAGGCGCCGGAGAGAACCACATGCCGCCGCAGCTTAAGAATCAAATCAAGGACAAAATTGAAGAGACGGAACAGCACAGGTCCAACAATAAGAGGAAGAAGATCGACGCCGATCTAAGTAACGGATCAGACTCGGAGCTGAATGAAAACTCGacgagaaagaagaagaaaccgaTTGATCAAGAGAAGAAAGGTGATTGTGACACGGGATTAATTGATGTGTATAAGGTCAACAAAGCCAAAAATGGAGTTAAAGATACCAAAAAACAGGGTTTATCCAGGAAAACCAAGGAGAGTGGAAGTTTGATGTGTCATCAGTGCCAACGGAATGATAAGAGTGGAGTCGTCTTTTGCTCGAGTTGCAACAGAAAGCGCTATTGTTACGAGTGCATTGAGAACTGGTACCCAGGAAAAACCCGTGAGGACTTCAAGAATGCGTGTCCATTTTGTTGGGGCAACTGCAACTGCAAAGCTTGCTTGCGGGAGTTTCCTGTGCTAATGGACCGGGAAGTAAATGTCAGTGTCAAATTACAGCGGCTGCGGTACTTGCTATCTAAAGCTCTTCCGGTTCTTAGGCATATCCACAGGGAGCAGAGCTTGGAACTAGAGACTGAAATCAAAATAAGAGGTAAGCAACTGCAAGAAGTTGACATAAAAAGAACAAAGCTAGATGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATATATGGATTTTACCGTAGTTGCCCCAACACAAGTTGCTCTTATGATCTCTGTCTTGTGTGCTGTCAAGAGCTCAGAGAGGAATGGAAAGCTAATCATGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGTGGTTGTGGTACTGCATTGCTAGAACTAAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGATCTCACTAGAAATTACACCCCTCTGGATGTGGATATTACTGAAAAGTGTTCTTTATGTCAGATAAATTTGTTTGAAGGAAAAATCAACCATGACGTCAGGAGGGCATCATTCCGGGATGACAGTaaagataactttttatataGTCCAAATGCCCTTGACATTTCTGATGATGAGATCGAGCACTTCCAGAGGCACTGGATGAGGGGTGAACCTGTGATTGTGAGAAATGTTCTGGCCAAAACATCCGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTCAAAGAGGAAACACAAAGTGTTAAGGCTGTAGATTGCTTGGATTGGTGTGGGGTTGAAATAAACATACACCAATTTTTCAAAGGCTACGTAGAAGGCCGATTGCATAAAAATAAGTGGCCAGAAATGTTGAAATTAAAAGATTGGCCTTCATCAACCTCTTTTGAAGAGCGTTTACCTAGGCATGGTGCTGAATTCCTTGCTGCACTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACAAAACTGCACTGCGATGTCTCTGATGCGGTGAATGTGTTGACACACACAAACAAGGTGAATATAGCTCCCTGGCAGAGAGAGAgcataaataaattgaagaaggAATATGGTAAAGAAGACTATTTCGATTTTTGTTGTGAAGCTTTAGACAATGTTGATGGAAAATCCAAATCTAAAGCATTGGACGATGATCAAAAGGCAGAGAATGGAGTTAACCGGATTTCACCAAGTAACCAAGTAGAAAAGTGCATTTCATCAATATCCGAAGACTTGAATGGAAAGGTAGAAACACAGAACACAGAACAACGTGATGATAACGGAAAGGGCTCTTGCACCTATAGAAATAAAGACAGAGTGAAGATTGCTTTTTCAGATGGTAATGTGTCTGGTGATCCcaaaattgaatcaaaacaaagtaTGGGGAGAGAGTCTTTGGACATTGATAATGGAGCTGCGGCTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGCCGGGAAGATGTCCCAAAGATAATTGAGTACTTAAGAAAGCACAAGAAGGAATTTCGCCATATCAACAACAAACCTGTTGATTCAGTTATACATCCCATTCACGATCAGACTATATTCTTGAATGAGAGACATAAGAAACAGCTAAAAAGAGAATTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAACAGACAGTCTTGTATGAAGGTTGCACTTGACTTTGTTTCTCCAGAAAATGTTGGAGAATGTTTACGACTAACTGAAGAGTTTCGTTTACTCCCGAAGAACCACAGGGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACCCTTTATGCTGTGAGTAATGCTGTTAGACAAGTTAAAGAACTGATTGATAGCCAGTGA 2562 0.4126 MDSPSGGCPKLAAKPGAGENHMPPQLKNQIKDKIEETEQHRSNNKRKKIDADLSNGSDSELNENSTRKKKKPIDQEKKGDCDTGLIDVYKVNKAKNGVKDTKKQGLSRKTKESGSLMCHQCQRNDKSGVVFCSSCNRKRYCYECIENWYPGKTREDFKNACPFCWGNCNCKACLREFPVLMDREVNVSVKLQRLRYLLSKALPVLRHIHREQSLELETEIKIRGKQLQEVDIKRTKLDESERLYCDNCSTSIYGFYRSCPNTSCSYDLCLVCCQELREEWKANHDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITEKCSLCQINLFEGKINHDVRRASFRDDSKDNFLYSPNALDISDDEIEHFQRHWMRGEPVIVRNVLAKTSGLSWEPMVMWRALRETGSKAKFKEETQSVKAVDCLDWCGVEINIHQFFKGYVEGRLHKNKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRESINKLKKEYGKEDYFDFCCEALDNVDGKSKSKALDDDQKAENGVNRISPSNQVEKCISSISEDLNGKVETQNTEQRDDNGKGSCTYRNKDRVKIAFSDGNVSGDPKIESKQSMGRESLDIDNGAAAVLGGAVWDIFRREDVPKIIEYLRKHKKEFRHINNKPVDSVIHPIHDQTIFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVGECLRLTEEFRLLPKNHRAKEDKLEVKKMTLYAVSNAVRQVKELIDSQ 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04696 853 Pfam JmjC domain, hydroxylase 701 799 IPR003347 -
Tsu07g04696 853 Gene3D Cupin 373 825 - -
Tsu07g04696 853 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 646 852 IPR045109 GO:0032454|GO:0033169
Tsu07g04696 853 ProSiteProfiles JmjC domain profile. 504 816 IPR003347 -
Tsu07g04696 853 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 25 278 - -
Tsu07g04696 853 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 25 278 IPR045109 GO:0032454|GO:0033169
Tsu07g04696 853 MobiDBLite consensus disorder prediction 62 78 - -
Tsu07g04696 853 Coils Coil 27 47 - -
Tsu07g04696 853 MobiDBLite consensus disorder prediction 1 78 - -
Tsu07g04696 853 CDD cupin_RmlC-like 740 788 - -
Tsu07g04696 853 ProSiteProfiles Zinc finger RING-type profile. 118 164 IPR001841 -
Tsu07g04696 853 MobiDBLite consensus disorder prediction 26 54 - -
Tsu07g04696 853 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 278 661 IPR045109 GO:0032454|GO:0033169
Tsu07g04696 853 SMART cupin_9 485 816 IPR003347 -
Tsu07g04696 853 SUPERFAMILY Clavaminate synthase-like 382 835 - -
Tsu07g04696 853 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 278 661 - -
Tsu07g04696 853 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 646 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04696 Tsu-Chr7 51406139 51417721 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu07g04696 JmjC 2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04696 K15601 - fve:101293935 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04696 07 51406139 51417721 Tsu07g04696 07 51406139 51417721 ECH