Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04684 ATGGACATCTTGAAGTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACCTCAGAAGACTATTGTCAAAATTCTTGGTGCAGTGAGAATAACATCCTTATTCGTTTCCCATTTCGATTACAAGATGAAGGTGATCAGTATCCTTATTGTGGCTATCCTGGTTTCAGCTTAACTTGTACTAATGATAGCAAAACAGTTCTAACACTTCCTTATTCAGGAGTTTTCTATGTTCGCAGAATTGATTATCTCGGACACCACATACAAGTCTATGACCCTCATCATTGCCTTCCAAATCGTCTTCTAAGCCTCAACCTTTCAGGTTCACCTTTCGTTACCGAATTTCTTACTAACTACACCCTCTTGAGTTGCTCAACTCCGAACCTAGGATCGCAATTCACACCGGTTGATTGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCATTGAGCTTCACCAATTCATTGCCTCAGTCTTGCCATGTTAATAGAAATATCTCAGTTCCAGTTACAACATCATATCAGGAAATCTTCAGTGAAGATCTTCAACTAACATGGTCTTCACCTGATTGTAGATATTGTGAATTACTAGATAGCATGTGTGGATTTGAGAGCAGAAATAGTAATCATGTTCGTTGTTTCCCTAATCACCAAACAGAAGTCACAACTTTTCCATTTTCAGACCGTTCACAAGATGGTCATTCACACGGTAGTCTTTTGATTTCAAGAATCATCATATTATCTATTGGGGGAATAGCTATGTTATGCGCAATTGGGATAGGATGCTTAACGCACTTCAAGCACAGAAGAAGGACAATATCAGATGAACATGCCATTGACATTACCATTACAAGGATGAGGATGGGTTTAGATGAGTCAACAATTGAGTCTTTTGAGAAGATTGTATTAGGGGAGAGCCGAAGACTTCCGGGAGTAGGACATGCTGATGGAACTGGATGTTGTTCAATATGCCTATCAGAGTACAACGGTAAGGACATAATCAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTCACTGCATCGATGAATGGCTTCGCATGAATGCTACATGTCCAATTTGCCGCAACACACCTTCCCCTTGTCATTCTCATCttcacatatcatcatcatcatga 1149 0.3864 MDILKFLFHLFILFPVIYTSEDYCQNSWCSENNILIRFPFRLQDEGDQYPYCGYPGFSLTCTNDSKTVLTLPYSGVFYVRRIDYLGHHIQVYDPHHCLPNRLLSLNLSGSPFVTEFLTNYTLLSCSTPNLGSQFTPVDCLSNSTHFVSAIPSLSFTNSLPQSCHVNRNISVPVTTSYQEIFSEDLQLTWSSPDCRYCELLDSMCGFESRNSNHVRCFPNHQTEVTTFPFSDRSQDGHSHGSLLISRIIILSIGGIAMLCAIGIGCLTHFKHRRRTISDEHAIDITITRMRMGLDESTIESFEKIVLGESRRLPGVGHADGTGCCSICLSEYNGKDIIRCIPECKHCFHAHCIDEWLRMNATCPICRNTPSPCHSHLHISSSS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04684 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 371 IPR013083 -
Tsu07g04684 382 Pfam Ring finger domain 324 366 IPR001841 -
Tsu07g04684 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 376 - -
Tsu07g04684 382 SUPERFAMILY RING/U-box 323 370 - -
Tsu07g04684 382 Pfam Wall-associated receptor kinase C-terminal 169 218 IPR032872 -
Tsu07g04684 382 Pfam Wall-associated receptor kinase galacturonan-binding 24 93 IPR025287 GO:0030247
Tsu07g04684 382 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 376 - -
Tsu07g04684 382 ProSiteProfiles Zinc finger RING-type profile. 324 366 IPR001841 -
Tsu07g04684 382 SMART ring_2 324 365 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04684 Tsu-Chr7 51310522 51311986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04684 24 371 C3H Transcription Factor Family AT2G46495 38.504 1.90e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04684 - - gmx:100799895 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04684 07 51310522 51311986 Tsu07g04684 07 51310522 51311986 ECH
Tsu07g04684 07 51310522 51311986 Tsu08g00932 08 10206041 10208204 PCT